MrBayes (custom)

DESCRIPTION
        MrBayes is a program for Bayesian inference and model choice across
        a wide range of phylogenetic and evolutionary models. MrBayes uses
        Markov chain Monte Carlo (MCMC) methods to estimate the posterior
        distribution of model parameters.

        http://mrbayes.sourceforge.net/manual.php


PARAMETERS

    MrBayes command file

        This option allows you to provide a custom MrBayes command file.
        A command file may contain any command that is normally issued
        inside the MrBayes shell, with the difference that each command line
        is ended with a semi-colon.

        You can use the following minimal example as a starting point for your own
        command files.

            begin mrbayes;
                set autoclose=yes nowarn=yes;
                lset nst=6 rates=propinv;
                mcmc ngen=100000;
                sump;
                sumt Outputname=mrbayes_out Conformat=simple;
            end;


        NOTES

            The consensus tree has to be named mrbayes_out. Otherwise ARB will not
            be able to import it.

            It is not necessary to include any kind of data loading command.
            The selected sequences will be loaded automatically.



LICENSE
        GNU GENERAL PUBLIC LICENSE
        Version 2, June 1991