#Please insert up references in the next lines (line starts with keyword UP)
UP	arb.hlp
UP	glossary.hlp

#Please insert subtopic references  (line starts with keyword SUB)
#SUB	subtopic.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE		Design Sequencing Primers

OCCURRENCE	ARB_NT/Probes/Design Sequencing Primers

DESCRIPTION     This module will search for primers for all positions.

                The best result is one primer for all (marked) taxa,
                the worst case are n primers for n taxa.

                * does only search in marked sequences.
                * sequences need to be aligned.

                Searches for sections in alignment which require the lowest number
                of primer combinations.
                You have to specify the maximum allowed number of different primers.
                Specify '1' to report only primers valid for all marked species.

                The module outputs a list of primer candidates,
                probably outputs hundreds of pages.
                Checking these primers requires a lot of manual work.

		Press ctrl-C to abort the program.

SECTION         Field experience

                Bad sequences confuse the algorithm.
                Workaround: unmark them.

NOTES		None

EXAMPLES	None

WARNINGS	None

BUGS		No bugs known
