// ================================================================= // // // // File : ed4_awars.hxx // // Purpose : edit4 awars // // // // Institute of Microbiology (Technical University Munich) // // http://www.arb-home.de/ // // // // ================================================================= // #ifndef ED4_AWARS_HXX #define ED4_AWARS_HXX #define ED4_TEMP_AWAR "/tmp/edit4/" // path for temporary awars #define ED4_SEARCH_SAVE_BASE ED4_TEMP_AWAR "srchpara" // Level 1 Options #define ED4_AWAR_SEQUENCE_INFO_WIDTH "sequence_info/width" #define ED4_AWAR_TREE_WIDTH "tree/width" #define ED4_AWAR_COMPRESS_SEQUENCE_TYPE "sequence/compression_type" #define ED4_AWAR_COMPRESS_SEQUENCE_GAPS "sequence/compression_type_gaps" #define ED4_AWAR_COMPRESS_SEQUENCE_HIDE "sequence/compression_type_hide" #define ED4_AWAR_COMPRESS_SEQUENCE_PERCENT "sequence/compression_type_hide_percent" #define ED4_AWAR_DIGITS_AS_REPEAT "edit/digits_as_repeat" #define ED4_AWAR_FAST_CURSOR_JUMP "edit/fast_cursor_jump" #define ED4_AWAR_CURSOR_TYPE "edit/cursor_type" #define ED4_AWAR_SCROLL_SPEED_X "scrolling/speed_x" #define ED4_AWAR_SCROLL_SPEED_Y "scrolling/speed_y" #define ED4_AWAR_SCROLL_MARGIN "scrolling/margin" #define ED4_AWAR_GAP_CHARS "sequence/gap_chars" #define ED4_AWAR_ANNOUNCE_CHECKSUM_CHANGES "sequence/announce_checksum_changes" // Expert Options #define ED4_AWAR_GROUP_INDENT "group/indent" // Width of Group Bracket #define ED4_AWAR_GROUP_COLOR "group/color" // Color Nr for Brackets // consensus definition #define ED4_AWAR_CONSENSUS_COUNTGAPS "con/countgaps" #define ED4_AWAR_CONSENSUS_GAPBOUND "con/gapbound" #define ED4_AWAR_CONSENSUS_GROUP "con/group" #define ED4_AWAR_CONSENSUS_CONSIDBOUND "con/considbound" #define ED4_AWAR_CONSENSUS_UPPER "con/upper" #define ED4_AWAR_CONSENSUS_LOWER "con/lower" #define ED4_AWAR_CONSENSUS_SHOW "con/show" // create species from consensus #define ED4_AWAR_CREATE_FROM_CONS_REPL_EQUAL "concreate/repl_equal" #define ED4_AWAR_CREATE_FROM_CONS_REPL_POINT "concreate/repl_point" #define ED4_AWAR_CREATE_FROM_CONS_CREATE_POINTS "concreate/create_points" #define ED4_AWAR_CREATE_FROM_CONS_ALL_UPPER "concreate/all_upper" #define ED4_AWAR_CREATE_FROM_CONS_DATA_SOURCE "concreate/data_source" // Replace awars #define ED4_AWAR_REP_SEARCH_PATTERN "replace/spat" #define ED4_AWAR_REP_REPLACE_PATTERN "replace/rpat" // NDS awars #define ED4_AWAR_NDS_SELECT "nds/select" #define ED4_AWAR_NDS_SELECT_TEMPLATE "nds/pat_%i/select" #define ED4_AWAR_NDS_DESCRIPTION_TEMPLATE "nds/pat_%i/description" #define ED4_AWAR_NDS_ACI_TEMPLATE "nds/pat_%i/aci" #define ED4_AWAR_NDS_WIDTH_TEMPLATE "nds/pat_%i/width" #define ED4_AWAR_NDS_INFO_WIDTH "nds/infowidth" #define ED4_AWAR_NDS_ECOLI_NAME "nds/ecoliname" // Search awars #define ED4_AWAR_USER1_SEARCH_PATTERN "search/user1/pattern" #define ED4_AWAR_USER1_SEARCH_MIN_MISMATCHES "search/user1/min_mismatches" #define ED4_AWAR_USER1_SEARCH_MAX_MISMATCHES "search/user1/max_mismatches" #define ED4_AWAR_USER1_SEARCH_CASE "search/user1/case" #define ED4_AWAR_USER1_SEARCH_TU "search/user1/tu" #define ED4_AWAR_USER1_SEARCH_PAT_GAPS "search/user1/pat_gaps" #define ED4_AWAR_USER1_SEARCH_SEQ_GAPS "search/user1/seq_gaps" #define ED4_AWAR_USER1_SEARCH_SHOW "search/user1/show" #define ED4_AWAR_USER1_SEARCH_OPEN_FOLDED "search/user1/open_folded" #define ED4_AWAR_USER1_SEARCH_AUTO_JUMP "search/user1/autoJump" #define ED4_AWAR_USER1_SEARCH_REVERSE "search/user1/reverse" #define ED4_AWAR_USER1_SEARCH_COMPLEMENT "search/user1/complement" #define ED4_AWAR_USER1_SEARCH_EXACT "search/user1/exact" #define ED4_AWAR_USER2_SEARCH_PATTERN "search/user2/pattern" #define ED4_AWAR_USER2_SEARCH_MIN_MISMATCHES "search/user2/min_mismatches" #define ED4_AWAR_USER2_SEARCH_MAX_MISMATCHES "search/user2/max_mismatches" #define ED4_AWAR_USER2_SEARCH_CASE "search/user2/case" #define ED4_AWAR_USER2_SEARCH_TU "search/user2/tu" #define ED4_AWAR_USER2_SEARCH_PAT_GAPS "search/user2/pat_gaps" #define ED4_AWAR_USER2_SEARCH_SEQ_GAPS "search/user2/seq_gaps" #define ED4_AWAR_USER2_SEARCH_SHOW "search/user2/show" #define ED4_AWAR_USER2_SEARCH_OPEN_FOLDED "search/user2/open_folded" #define ED4_AWAR_USER2_SEARCH_AUTO_JUMP "search/user2/autoJump" #define ED4_AWAR_USER2_SEARCH_REVERSE "search/user2/reverse" #define ED4_AWAR_USER2_SEARCH_COMPLEMENT "search/user2/complement" #define ED4_AWAR_USER2_SEARCH_EXACT "search/user2/exact" #define ED4_AWAR_PROBE_SEARCH_PATTERN AWAR_TARGET_STRING // s.a.: PROBE_DESIGN/probe_design.cxx #define ED4_AWAR_PROBE_SEARCH_MIN_MISMATCHES "search/probe/min_mismatches" #define ED4_AWAR_PROBE_SEARCH_MAX_MISMATCHES AWAR_MAX_MISMATCHES #define ED4_AWAR_PROBE_SEARCH_CASE "search/probe/case" #define ED4_AWAR_PROBE_SEARCH_TU "search/probe/tu" #define ED4_AWAR_PROBE_SEARCH_PAT_GAPS "search/probe/pat_gaps" #define ED4_AWAR_PROBE_SEARCH_SEQ_GAPS "search/probe/seq_gaps" #define ED4_AWAR_PROBE_SEARCH_SHOW "search/probe/show" #define ED4_AWAR_PROBE_SEARCH_OPEN_FOLDED "search/probe/open_folded" #define ED4_AWAR_PROBE_SEARCH_AUTO_JUMP "search/probe/autoJump" #define ED4_AWAR_PROBE_SEARCH_REVERSE "search/probe/reverse" #define ED4_AWAR_PROBE_SEARCH_COMPLEMENT "search/probe/complement" #define ED4_AWAR_PROBE_SEARCH_EXACT "search/probe/exact" #define ED4_AWAR_PRIMER1_SEARCH_PATTERN AWAR_PRIMER_TARGET_STRING #define ED4_AWAR_PRIMER1_SEARCH_MIN_MISMATCHES "search/primer1/min_mismatches" #define ED4_AWAR_PRIMER1_SEARCH_MAX_MISMATCHES "search/primer1/max_mismatches" #define ED4_AWAR_PRIMER1_SEARCH_CASE "search/primer1/case" #define ED4_AWAR_PRIMER1_SEARCH_TU "search/primer1/tu" #define ED4_AWAR_PRIMER1_SEARCH_PAT_GAPS "search/primer1/pat_gaps" #define ED4_AWAR_PRIMER1_SEARCH_SEQ_GAPS "search/primer1/seq_gaps" #define ED4_AWAR_PRIMER1_SEARCH_SHOW "search/primer1/show" #define ED4_AWAR_PRIMER1_SEARCH_OPEN_FOLDED "search/primer1/open_folded" #define ED4_AWAR_PRIMER1_SEARCH_AUTO_JUMP "search/primer1/autoJump" #define ED4_AWAR_PRIMER1_SEARCH_REVERSE "search/primer1/reverse" #define ED4_AWAR_PRIMER1_SEARCH_COMPLEMENT "search/primer1/complement" #define ED4_AWAR_PRIMER1_SEARCH_EXACT "search/primer1/exact" #define ED4_AWAR_PRIMER2_SEARCH_PATTERN "search/primer2/pattern" #define ED4_AWAR_PRIMER2_SEARCH_MIN_MISMATCHES "search/primer2/min_mismatches" #define ED4_AWAR_PRIMER2_SEARCH_MAX_MISMATCHES "search/primer2/max_mismatches" #define ED4_AWAR_PRIMER2_SEARCH_CASE "search/primer2/case" #define ED4_AWAR_PRIMER2_SEARCH_TU "search/primer2/tu" #define ED4_AWAR_PRIMER2_SEARCH_PAT_GAPS "search/primer2/pat_gaps" #define ED4_AWAR_PRIMER2_SEARCH_SEQ_GAPS "search/primer2/seq_gaps" #define ED4_AWAR_PRIMER2_SEARCH_SHOW "search/primer2/show" #define ED4_AWAR_PRIMER2_SEARCH_OPEN_FOLDED "search/primer2/open_folded" #define ED4_AWAR_PRIMER2_SEARCH_AUTO_JUMP "search/primer2/autoJump" #define ED4_AWAR_PRIMER2_SEARCH_REVERSE "search/primer2/reverse" #define ED4_AWAR_PRIMER2_SEARCH_COMPLEMENT "search/primer2/complement" #define ED4_AWAR_PRIMER2_SEARCH_EXACT "search/primer2/exact" #define ED4_AWAR_PRIMER3_SEARCH_PATTERN "search/primer3/pattern" #define ED4_AWAR_PRIMER3_SEARCH_MIN_MISMATCHES "search/primer3/min_mismatches" #define ED4_AWAR_PRIMER3_SEARCH_MAX_MISMATCHES "search/primer3/max_mismatches" #define ED4_AWAR_PRIMER3_SEARCH_CASE "search/primer3/case" #define ED4_AWAR_PRIMER3_SEARCH_TU "search/primer3/tu" #define ED4_AWAR_PRIMER3_SEARCH_PAT_GAPS "search/primer3/pat_gaps" #define ED4_AWAR_PRIMER3_SEARCH_SEQ_GAPS "search/primer3/seq_gaps" #define ED4_AWAR_PRIMER3_SEARCH_SHOW "search/primer3/show" #define ED4_AWAR_PRIMER3_SEARCH_OPEN_FOLDED "search/primer3/open_folded" #define ED4_AWAR_PRIMER3_SEARCH_AUTO_JUMP "search/primer3/autoJump" #define ED4_AWAR_PRIMER3_SEARCH_REVERSE "search/primer3/reverse" #define ED4_AWAR_PRIMER3_SEARCH_COMPLEMENT "search/primer3/complement" #define ED4_AWAR_PRIMER3_SEARCH_EXACT "search/primer3/exact" #define ED4_AWAR_SIG1_SEARCH_PATTERN AWAR_GENE_CONTENT #define ED4_AWAR_SIG1_SEARCH_MIN_MISMATCHES "search/sig1/min_mismatches" #define ED4_AWAR_SIG1_SEARCH_MAX_MISMATCHES "search/sig1/max_mismatches" #define ED4_AWAR_SIG1_SEARCH_CASE "search/sig1/case" #define ED4_AWAR_SIG1_SEARCH_TU "search/sig1/tu" #define ED4_AWAR_SIG1_SEARCH_PAT_GAPS "search/sig1/pat_gaps" #define ED4_AWAR_SIG1_SEARCH_SEQ_GAPS "search/sig1/seq_gaps" #define ED4_AWAR_SIG1_SEARCH_SHOW "search/sig1/show" #define ED4_AWAR_SIG1_SEARCH_OPEN_FOLDED "search/sig1/open_folded" #define ED4_AWAR_SIG1_SEARCH_AUTO_JUMP "search/sig1/autoJump" #define ED4_AWAR_SIG1_SEARCH_REVERSE "search/sig1/reverse" #define ED4_AWAR_SIG1_SEARCH_COMPLEMENT "search/sig1/complement" #define ED4_AWAR_SIG1_SEARCH_EXACT "search/sig1/exact" #define ED4_AWAR_SIG2_SEARCH_PATTERN "search/sig2/pattern" #define ED4_AWAR_SIG2_SEARCH_MIN_MISMATCHES "search/sig2/min_mismatches" #define ED4_AWAR_SIG2_SEARCH_MAX_MISMATCHES "search/sig2/max_mismatches" #define ED4_AWAR_SIG2_SEARCH_CASE "search/sig2/case" #define ED4_AWAR_SIG2_SEARCH_TU "search/sig2/tu" #define ED4_AWAR_SIG2_SEARCH_PAT_GAPS "search/sig2/pat_gaps" #define ED4_AWAR_SIG2_SEARCH_SEQ_GAPS "search/sig2/seq_gaps" #define ED4_AWAR_SIG2_SEARCH_SHOW "search/sig2/show" #define ED4_AWAR_SIG2_SEARCH_OPEN_FOLDED "search/sig2/open_folded" #define ED4_AWAR_SIG2_SEARCH_AUTO_JUMP "search/sig2/autoJump" #define ED4_AWAR_SIG2_SEARCH_REVERSE "search/sig2/reverse" #define ED4_AWAR_SIG2_SEARCH_COMPLEMENT "search/sig2/complement" #define ED4_AWAR_SIG2_SEARCH_EXACT "search/sig2/exact" #define ED4_AWAR_SIG3_SEARCH_PATTERN "search/sig3/pattern" #define ED4_AWAR_SIG3_SEARCH_MIN_MISMATCHES "search/sig3/min_mismatches" #define ED4_AWAR_SIG3_SEARCH_MAX_MISMATCHES "search/sig3/max_mismatches" #define ED4_AWAR_SIG3_SEARCH_CASE "search/sig3/case" #define ED4_AWAR_SIG3_SEARCH_TU "search/sig3/tu" #define ED4_AWAR_SIG3_SEARCH_PAT_GAPS "search/sig3/pat_gaps" #define ED4_AWAR_SIG3_SEARCH_SEQ_GAPS "search/sig3/seq_gaps" #define ED4_AWAR_SIG3_SEARCH_SHOW "search/sig3/show" #define ED4_AWAR_SIG3_SEARCH_OPEN_FOLDED "search/sig3/open_folded" #define ED4_AWAR_SIG3_SEARCH_AUTO_JUMP "search/sig3/autoJump" #define ED4_AWAR_SIG3_SEARCH_REVERSE "search/sig3/reverse" #define ED4_AWAR_SIG3_SEARCH_COMPLEMENT "search/sig3/complement" #define ED4_AWAR_SIG3_SEARCH_EXACT "search/sig3/exact" // Other internal awars #define ED4_AWAR_SPECIES_TO_CREATE ED4_TEMP_AWAR "species_to_create" #else #error ed4_awars.hxx included twice #endif