#ifndef ED4_DEFS_HXX #define ED4_DEFS_HXX #ifndef AW_COLOR_GROUPS_HXX #include #endif #ifndef AW_WINDOW_HXX #include #endif #ifndef AW_POSITION_HXX #include #endif #ifndef ARBDB_BASE_H #include #endif #if defined(DEBUG) // #define TRACE_REFRESH // #define TRACE_JUMPS #endif #define e4_assert(bed) arb_assert(bed) class ED4_root; class ED4_database; struct GBS_strstruct; typedef int ED4_COORDINATE; enum ED4_EDITMODE { AD_ALIGN, // add & remove of . possible (default) AD_NOWRITE, // no edits allowed AD_NOWRITE_IF_COMPRESSED, AD_REPLACE, // all edits (overwrite) AD_INSERT // all edits (insert) }; // global variables extern ED4_root *ED4_ROOT; extern int INFO_TERM_TEXT_YOFFSET; extern int SEQ_TERM_TEXT_YOFFSET; extern int TERMINAL_HEIGHT; // standard terminal height (sequences, name, info, etc..) extern int MAXSEQUENCECHARACTERLENGTH; // greatest # of characters in a sequence string terminal extern int MAXNAME_WIDTH; // max. pixel width of ED4_species_name_terminal (effective width also depends on group-nesting) extern int MAXINFO_WIDTH; // pixel width used to display sequence info ("CONS", "4data", etc.) extern int FLAG_WIDTH; // pixel width used to display species flags (and its header) extern long ED4_counter; // use ED4_init_notFoundMessage and ED4_finish_and_show_notFoundMessage to // modify the following elements #define MAX_SHOWN_MISSING_SPECIES 200U // limit no of missing species/data printed into not_found_message extern size_t not_found_counter; // nr of species which haven't been found extern GBS_strstruct *not_found_message; // error message containing (some) missing/unloadable species extern long max_seq_terminal_length; // global maximum of sequence terminal length extern ED4_EDITMODE awar_edit_mode; extern long awar_edit_rightward; // 0 = leftward, 1 = rightward extern bool DRAW; // globally used defines and flags #define INFINITE -1 #define SLIDER_OFFSET 5 // these are recommended for accessing ED4_extension: #define X_POS 0 #define Y_POS 1 #define WIDTH 0 #define HEIGHT 1 // size of some display elements: #define BRACKET_WIDTH 11 #define SPACER_HEIGHT 5 #define SPACER_NOCONS_HEIGHT 15 // height of spacer at top of group (used if consensus is hidden and group is folded) #define SEQUENCE_INFO_WIDTH 50 // default width of ED4_sequence_info_terminal (overridden via ref-terminal) #define TREE_TERMINAL_WIDTH 100 // some default-width (used for ED4_line_terminal only; @@@ has no noteable effect) #define COLUMN_STAT_ROW_HEIGHT(font_height) (2.2*(font_height)) // each row contains 2 sub-rows (plus some xtra space) #define COLUMN_STAT_ROWS 4 #define MAX_POSSIBLE_SEQ_LENGTH 100000000 #define MAXWINDOWS 5 #define AWAR_EDIT_MODE "tmp/edit4/edit_mode" #define AWAR_INSERT_MODE "tmp/edit4/insert_mode" #define AWAR_EDIT_SECURITY_LEVEL "tmp/edit4/security_level" #define AWAR_EDIT_SECURITY_LEVEL_ALIGN "tmp/edit4/security_level_align" #define AWAR_EDIT_SECURITY_LEVEL_CHANGE "tmp/edit4/security_level_change" #define AWAR_EDIT_CONFIGURATION "tmp/edit4/configuration" #define AWAR_EDIT_SEQ_POSITION "tmp/edit4/jump_to_position%d" // used to create ED4_window.awar_path_for_cursor[] #define AWAR_EDIT_ECOLI_POSITION "tmp/edit4/cursor_ref_ecoli%d" // used to create ED4_window.awar_path_for_Ecoli[] #define AWAR_EDIT_BASE_POSITION "tmp/edit4/cursor_to_basepos%d" // used to create ED4_window.awar_path_for_basePos[] #define AWAR_EDIT_IUPAC "tmp/edit4/iupac%d" // used to create ED4_window.awar_path_for_IUPAC[] #define AWAR_EDIT_HELIXNR "tmp/edit4/helixnr%d" // used to create ED4_window.awar_path_for_helixNr[] #define AWAR_FIELD_CHOSEN "tmp/edit4/field_chosen" // used for field selection box #define AWAR_EDIT_TITLE_MODE "edit4/title_mode" #define AWAR_EDIT_HELIX_SPACING "edit4/helix_add_spacing" #define AWAR_EDIT_TERMINAL_SPACING "edit4/terminal_add_spacing" #define CHARACTEROFFSET 5 // spacer-width left of text-terminal #define NAME_BUFFERSIZE 100 // size of buffer used to build terminal/manager IDs typedef long ED4_index; #define ED4_SCROLL_OVERLAP 20 // 15 Pixels overlap enum ED4_level { // has to contain bit values LEV_INVALID = -1U, LEV_NONE = 0, LEV_ROOT = 0x1, LEV_DEVICE = 0x2, LEV_AREA = 0x4, LEV_MULTI_SPECIES = 0x8, LEV_SPECIES = 0x10, LEV_MULTI_SEQUENCE = 0x20, LEV_SEQUENCE = 0x40, LEV_TREE = 0x80, LEV_SPECIES_NAME = 0x100, LEV_SEQUENCE_INFO = 0x200, LEV_SEQUENCE_STRING = 0x400, LEV_ORF = 0x800, LEV_SPACER = 0x1000, LEV_LINE = 0x2000, LEV_MULTI_NAME = 0x4000, LEV_NAME_MANAGER = 0x8000, LEV_GROUP = 0x10000, LEV_ROOTGROUP = 0x20000, LEV_BRACKET = 0x40000, LEV_PURE_TEXT = 0x80000, LEV_COL_STAT = 0x100000, LEV_FLAG_HEADER = 0x200000, LEV_FLAG = 0x400000, }; enum ED4_datamode { ED4_D_SPECIES, ED4_D_EXTENDED }; enum ED4_movemode { ED4_M_NO_MOVE = 0, ED4_M_HORIZONTAL = 1, ED4_M_VERTICAL = 2, ED4_M_FREE = 4 }; enum ED4_returncode { ED4_R_OK = 0, ED4_R_WARNING = 1, ED4_R_IMPOSSIBLE = 2, ED4_R_ERROR = 4, ED4_R_BREAK = 8, }; enum ED4_AREA_LEVEL { ED4_A_TOP_AREA, ED4_A_MIDDLE_AREA, ED4_A_BOTTOM_AREA, ED4_A_ERROR }; enum ED4_properties { PROP_NONE = 0, PROP_IS_MANAGER = 0x1, PROP_IS_TERMINAL = 0x2, PROP_HORIZONTAL = 0x4, PROP_VERTICAL = 0x8, PROP_DYNA_RESIZE = 0x10, // if set => allowed to resize dynamically (static_prop => object type is capable; auto-copied to dynamic_prop) PROP_SELECTABLE = 0x20, PROP_DRAGABLE = 0x40, PROP_MOVABLE = 0x80, PROP_IS_HANDLE = 0x100, PROP_CURSOR_ALLOWED = 0x200, // PROP_ = 0x400, // PROP_ = 0x800, PROP_IS_FOLDED = 0x1000, // Flag whether group is folded or not PROP_CONSENSUS_RELEVANT = 0x2000, // contains information relevant for consensus PROP_ALIGNMENT_DATA = 0x4000, // contains aligned data (also SAIs) }; enum ED4_cursor_move { ED4_C_UP, ED4_C_DOWN, ED4_C_LEFT, ED4_C_RIGHT, ED4_C_NONE }; enum ED4_update_flag { ED4_U_UP = 0, ED4_U_UP_DOWN }; enum ED4_border_flag { ED4_B_BORDER, ED4_B_INDENT, ED4_B_BOTTOM_AREA }; enum ED4_consensus { ED4_K_ADD, ED4_K_SUB }; enum ED4_aa_seq_flag { ED4_AA_FRWD_1, ED4_AA_FRWD_2, ED4_AA_FRWD_3, ED4_AA_RVRS_1, ED4_AA_RVRS_2, ED4_AA_RVRS_3, ED4_AA_DB_FIELD }; enum ED4_direction { ED4_D_VERTICAL, ED4_D_HORIZONTAL, ED4_D_ALL_DIRECTION, }; class ED4_base; class ED4_terminal; class ED4_species_name_terminal; struct ED4_move_info { ED4_base *object; // object to be moved AW_pos end_x, end_y; // position to move to ED4_movemode mode; // move mode ED4_level preferred_parent; // level to move to }; struct ED4_highlighted_entry { ED4_species_name_terminal *object; }; struct ED4_extension { // contains info about graphical properties AW_pos position[2]; // upper left corner (pos_x, pos_y) in relation to parent // !!! WARNING: This is a hack!!! Every time you change 'position' you HAVE TO call ED4_base::touch_world_cache() !!! AW_pos size[2]; // width and height ED4_index y_folded; // remember old position of consensus when folding group AW::Vector get_size() const { return AW::Vector(size[WIDTH], size[HEIGHT]); } AW::Vector get_parent_offset() const { return AW::Vector(position[X_POS], position[Y_POS]); } bool set_size_does_change(int idx, AW_pos value) { // returns true if changed e4_assert(idx == WIDTH || idx == HEIGHT); if (size[idx] != value) { size[idx] = value; return true; } return false; } #if defined(IMPLEMENT_DUMP) void dump(size_t indent) const; #endif // IMPLEMENT_DUMP }; struct ED4_scroll_picture { bool scroll; long old_x; long old_y; ED4_scroll_picture() : scroll(false), old_x(0), old_y(0) {} }; enum ED4_CursorJumpType { ED4_JUMP_CENTERED, // centers the cursor ED4_JUMP_KEEP_VISIBLE, // keeps the cursor visible (keeps a fixed margin) ED4_JUMP_KEEP_POSITION, // paint cursor at previous position }; struct ED4_update_info { // if you add new elements, please ensure to initialize them in ED4_base::ED4_base() unsigned int resize : 1; unsigned int refresh : 1; unsigned int clear_at_refresh : 1; unsigned int linked_to_folding_line : 1; unsigned int linked_to_scrolled_rectangle : 1; unsigned int refresh_horizontal_scrolling : 1; unsigned int refresh_vertical_scrolling : 1; unsigned int delete_requested : 1; unsigned int update_requested : 1; void set_clear_at_refresh(int value) { clear_at_refresh = value; } void set_refresh(int value) { refresh = value; } void set_resize(int value) { resize = value; } #if defined(IMPLEMENT_DUMP) void dump(size_t indent) const; #endif // IMPLEMENT_DUMP }; struct ED4_coords { long top_area_x, top_area_y, top_area_height, middle_area_x, middle_area_y, window_width, // of whole window (top and middle area and ... ) window_height, // of whole window (top and middle area and ... ) window_upper_clip_point, // absolute coordinate of upper visible clipping point in middle area window_lower_clip_point, // absolute coordinate of lower visible clipping point in middle area window_left_clip_point, // absolute coordinate of left visible clipping point in top and middle area window_right_clip_point; // absolute coordinate of right visible clipping point in top and middle area void clear() { top_area_x = 0; top_area_y = 0; top_area_height = 0; middle_area_x = 0; middle_area_y = 0; window_width = 0; window_height = 0; window_upper_clip_point = 0; window_lower_clip_point = 0; window_left_clip_point = 0; window_right_clip_point = 0; } }; #else #error ed4_defs.hxx included twice #endif