/*
Copyright (c) 2006-2018 Elmar Pruesse <elmar.pruesse@ucdenver.edu>

This file is part of SINA.
SINA is free software: you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free
Software Foundation, either version 3 of the License, or (at your
option) any later version.

SINA is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
for more details.

You should have received a copy of the GNU General Public License
along with SINA.  If not, see <http://www.gnu.org/licenses/>.

Additional permission under GNU GPL version 3 section 7

If you modify SINA, or any covered work, by linking or combining it
with components of ARB (or a modified version of that software),
containing parts covered by the terms of the
ARB-public-library-license, the licensors of SINA grant you additional
permission to convey the resulting work. Corresponding Source for a
non-source form of such a combination shall include the source code
for the parts of ARB used as well as that of the covered work.
*/

#ifndef _RW_CSV_H_
#define _RW_CSV_H_

#include "tray.h"

#include <fstream>
#include <memory>
#include <boost/program_options.hpp>
#include <boost/filesystem.hpp>

namespace sina {

class logger_progress;

namespace rw_csv {
class writer {
    struct priv_data;
    std::shared_ptr<priv_data> data;
public:
    writer(const boost::filesystem::path& outfile,
           unsigned int copy_relatives,
           std::vector<std::string>& fields);
    writer(const writer& o);
    writer& operator=(const writer& o);
    ~writer();
    tray operator()(tray t);
};

void get_options_description(boost::program_options::options_description& main,
                             boost::program_options::options_description& adv);
void validate_vm(boost::program_options::variables_map& /*unused*/,
                 boost::program_options::options_description& /*unused*/);

} // namespace rw_csv
} // namespace sina

#endif // _RW_FASTA_H

/*
  Local Variables:
  mode:c++
  c-file-style:"stroustrup"
  c-file-offsets:((innamespace . 0)(inline-open . 0)(case-label . 0))
  indent-tabs-mode:nil
  fill-column:99
  End:
*/
// vim: filetype=cpp:expandtab:shiftwidth=4:tabstop=8:softtabstop=4:encoding=utf-8:textwidth=99 :