/*
Copyright (c) 2006-2018 Elmar Pruesse <elmar.pruesse@ucdenver.edu>

This file is part of SINA.
SINA is free software: you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free
Software Foundation, either version 3 of the License, or (at your
option) any later version.

SINA is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
for more details.

You should have received a copy of the GNU General Public License
along with SINA.  If not, see <http://www.gnu.org/licenses/>.

Additional permission under GNU GPL version 3 section 7

If you modify SINA, or any covered work, by linking or combining it
with components of ARB (or a modified version of that software),
containing parts covered by the terms of the
ARB-public-library-license, the licensors of SINA grant you additional
permission to convey the resulting work. Corresponding Source for a
non-source form of such a combination shall include the source code
for the parts of ARB used as well as that of the covered work.
*/

#include "tray.h"
#include <sstream>

//#define DEBUG_TRAY
#ifdef DEBUG_TRAY
#define DBG(x) std::cerr << "TRAY (" << this << "): " << x << std::endl
#else
#define DBG(x)
#endif


namespace sina {

tray::tray() {
    DBG("Construct");
}

tray::tray(const tray& o)
    : seqno(o.seqno),
      input_sequence(o.input_sequence),
      aligned_sequence(o.aligned_sequence),
      alignment_reference(o.alignment_reference),
      search_result(o.search_result),
      astats(o.astats)
{
    log.str(o.log.str());
    DBG("Copy from " << &o);
}

tray&
tray::operator=(const tray& o) {
    seqno=o.seqno;
    input_sequence=o.input_sequence;
    aligned_sequence=o.aligned_sequence;
    alignment_reference=o.alignment_reference;
    search_result=o.search_result;
    log.str(o.log.str());
    astats=o.astats;

    DBG("Assign from " << &o);

    return *this;
}

tray::~tray() {
    DBG("Destruct");
}

void
tray::destroy() {
    delete input_sequence;
    delete aligned_sequence;
    delete alignment_reference;
    delete search_result;
    delete astats;

    DBG("Destroy");
}


} // namespace sina;


/*
  Local Variables:
  mode:c++
  c-file-style:"stroustrup"
  c-file-offsets:((innamespace . 0)(inline-open . 0)(case-label . 0))
  indent-tabs-mode:nil
  fill-column:99
  End:
*/
// vim: filetype=cpp:expandtab:shiftwidth=4:tabstop=8:softtabstop=4:encoding=utf-8:textwidth=99 :