.SUFFIXES: .c .cxx .depend .o TOOLS := \ arb_2_ascii \ arb_2_bin \ arb_a2ps \ arb_calc_pvp \ arb_consensus_tree \ arb_dnarates \ arb_export_newick \ arb_export_rates \ arb_export_sequences \ arb_export_seq_filtered \ arb_export_tree \ arb_flush_mem \ arb_gene_probe \ arb_message \ arb_primer \ arb_probe \ arb_probe_match \ arb_read_tree \ arb_write_tree_comment \ arb_replace \ ifeq ($(DEBUG),1) TOOLS += arb_test arb_perf_test else ifeq ($(UNIT_TESTS),1) # DEBUG!=1 && UNIT_TESTS=1 TOOLS += arb_test endif endif ifeq ($(UNIT_TESTS),1) TOOLS += arb_sub2ascii endif # Note: you can define explicit test-dependencies for tools tested via 'arb_test' # see ../UNIT_TESTER/Makefile.test@EXTRA_TEST_DEPENDENCIES # ------------------------------------------------------------ # if you change lib-dependencies here, # please update corresponding definitions in ../BINDEP/ # and in ../Makefile@TOOLSLIBDEPENDS LIB_ARBDB := $(LIBPATH) $(ARBDB_LIB) $(ARB_GLIB_LIBS) LIBS_ARB_PROBE := ../SERVERCNTRL/SERVERCNTRL.a ../PROBE_COM/client.a ../SL/REGEXPR/REGEXPR.a LIBS_ARB_READ_TREE := ../SL/TREE_READ/TREE_READ.a LIBS_ARB_EXPORT_TREE := ../SL/TREE_WRITE/TREE_WRITE.a ../XML/XML.a $(LIBS_ARB_READ_TREE) LIBS_ARB_EXPORT_SEQ := ../SL/SEQIO/SEQIO.a ../SL/XFERSET/XFERSET.a ../XML/XML.a ../SL/INSDEL/INSDEL.a ../SL/FILTER/FILTER.a LIBS_ARB_EXPORT_SEQ_FILT:= ../SL/FILTSEQEXP/FILTSEQEXP.a ../SL/FILTER/FILTER.a LIBS_ARB_CALC_PVP := $(LIBS_ARB_READ_TREE) ../SL/PVP/PVP.a ../SL/PRONUC/PRONUC.a LIBS_ARB_CONSENSUS_TREE := $(LIBS_ARB_EXPORT_TREE) ../CONSENSUS_TREE/CONSENSUS_TREE.a OBJECTS:=$(addsuffix .o,$(TOOLS)) BINARIES:=$(addprefix $(ARBHOME)/bin/,$(TOOLS)) ifeq ('$(USE_GCC_70_OR_HIGHER)','yes') SUPPRESS_A2PS_WARNINGS:=-Wno-implicit-fallthrough else SUPPRESS_A2PS_WARNINGS:= endif all: $(BINARIES) %.o: %.cxx $(A_CXX) $(cflags) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) $< %.o: %.c $(A_CC) $(cflags) $(SUPPRESS_A2PS_WARNINGS) -c $< $(CC_INCLUDES) $(POST_COMPILE) $< $(ARBHOME)/bin/arb_probe: arb_probe.o $(LIBS_ARB_PROBE) $(use_ARB_main) $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(LIBS_ARB_PROBE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_probe_match: arb_probe_match.o $(LIBS_ARB_PROBE) $(use_ARB_main) $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(LIBS_ARB_PROBE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_read_tree: arb_read_tree.o $(LIBS_ARB_READ_TREE) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_READ_TREE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_write_tree_comment: arb_write_tree_comment.o $(LINK_EXECUTABLE) $@ $< $(LIB_ARBDB) $(ARBHOME)/bin/arb_export_tree: arb_export_tree.o $(LIBS_ARB_EXPORT_TREE) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_EXPORT_TREE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_export_newick: arb_export_newick.o $(LIBS_ARB_EXPORT_TREE) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_EXPORT_TREE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_export_sequences: arb_export_sequences.o $(LIBS_ARB_EXPORT_SEQ) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_EXPORT_SEQ) $(LIB_ARBDB) $(ARBHOME)/bin/arb_export_seq_filtered: arb_export_seq_filtered.o $(LIBS_ARB_EXPORT_SEQ_FILT) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_EXPORT_SEQ_FILT) $(LIB_ARBDB) $(ARBHOME)/bin/arb_calc_pvp: arb_calc_pvp.o $(LIBS_ARB_CALC_PVP) $(LINK_EXECUTABLE) $@ $< $(LIBS_ARB_CALC_PVP) $(LIB_ARBDB) $(ARBHOME)/bin/arb_consensus_tree: arb_consensus_tree.o $(LIBS_ARB_CONSENSUS_TREE) $(use_ARB_main) $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(LIBS_ARB_CONSENSUS_TREE) $(LIB_ARBDB) $(ARBHOME)/bin/arb_a2ps: arb_a2ps.o $(use_ARB_main_C) $(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $< $(LIB_ARBDB) $(ARBHOME)/bin/arb_2_bin: arb_2_bin.o $(LIBS_ARB_READ_TREE) $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(LIBS_ARB_READ_TREE) $(LIB_ARBDB) $(ARBHOME)/bin/%: %.o $(use_ARB_main) $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(LIB_ARBDB) clean: rm -f $(BINARIES) rm -f $(OBJECTS) proto: @echo "Nothing todo for proto in TOOLS" depends: $(MAKE) "DEBUG=1" "UNIT_TESTS=1" depends_debug DEPENDS = $(OBJECTS:.o=.depend) depends_debug: $(DEPENDS) @cat $(DEPENDS) | grep -v '^#' >>Makefile @rm $(DEPENDS) $(DEPENDS): depend.init depend.init: $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies .cxx.depend: $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ .c.depend: $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ # DO NOT DELETE # Do not add dependencies manually - use 'make depend' in $ARBHOME # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from main) arb_2_ascii.o: $(ARBHOME)/INCLUDE/ad_prot.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_assert.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_core.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_error.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_handlers.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_mem.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_msg.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_string.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbdb.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbdb_base.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbtools.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/attributes.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/cxxforward.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/dupstr.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/gccver.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/smartptr.h arb_2_ascii.o: $(ARBHOME)/INCLUDE/test_global.h arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_prot.h arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_t_prot.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_assert.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_core.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_error.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_mem.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_msg.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_string.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdb.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdb_base.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdbt.h arb_2_bin.o: $(ARBHOME)/INCLUDE/arbtools.h arb_2_bin.o: $(ARBHOME)/INCLUDE/attributes.h arb_2_bin.o: $(ARBHOME)/INCLUDE/cxxforward.h arb_2_bin.o: $(ARBHOME)/INCLUDE/downcast.h arb_2_bin.o: $(ARBHOME)/INCLUDE/dupstr.h arb_2_bin.o: $(ARBHOME)/INCLUDE/gccver.h arb_2_bin.o: $(ARBHOME)/INCLUDE/smartptr.h arb_2_bin.o: 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arb_calc_pvp.o: $(ARBHOME)/INCLUDE/smartptr.h arb_calc_pvp.o: $(ARBHOME)/INCLUDE/static_assert.h arb_calc_pvp.o: $(ARBHOME)/INCLUDE/test_global.h arb_calc_pvp.o: $(ARBHOME)/INCLUDE/TreeRead.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_core.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_defs.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_diff.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_error.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_file.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_mem.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_msg.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_progress.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_str.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_strarray.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_string.h arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arbdb.h arb_consensus_tree.o: 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