/*ARBDB ASCII*/ species_data %% (% species :5000 %$ (% name :7600 "CytLyti6" flag :7000 "m" full_name "Cytophaga lytica" short_name "C. lytica" strain "DSM 2039" aacid "395 " acc "ARB_6B3852E" tmp "397 " status "sorted" aa "395 " exclude "double entry" aa_pro "395 " ali_dna %% (% data :7000 "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MAKETFTTVL-----SE---L*SF-DSGAATDG----PM---PDDE---ELN--T---GMGADKLASHS--KFKK--EI-----IA---LR---FTKIME........" %) /*ali_prot*/ ali_dna_incomplete %% (% data :7000 "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................." %) /*ali_dna_incomplete*/ %) /*species*/ species :5000 %$ (% name :7600 "TaxOcell" flag :7000 "m" full_name "Taxeobacter ocellatus" short_name "T. ocellatus" strain "Myx 2105" aacid "395 " acc "ARB_21595EF" tmp "397 " status "sorted" aa "395 " exclude "double entry" aa_pro "395 " ali_dna %% (% data :7000 "............ATGGCTAAAGAAACTTTTACCACGGTGCTG---------------GCCGCT---------AAGCGTGACTTC---TCCTCGGGTGCTGCTACCGACGGG------------CCGATG---------CCCGACGACCCC---------GAGCTGAAC------ACC---------GGTATGGGTGCTGAAAACCTCAAGTCGCACAAA------AAGTTCTCGAAG------GAAATC---------------GTAGCT---------ATGCGC---------TTCACCGAAATCCTCGAC........................." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MAKETFTTVL-----AA---KRDF-SSGAATDG----PM---PDDP---ELN--T---GMGAENLKSHK--KFSK--EI-----VA---MR---FTEILD........" %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "BctFra12" flag :7000 "h" full_name "Bacteroides fragilis" short_name "B. fragilis" aacid "394 " acc "ARB_4560B41C" tmp "396 " status "sorted" aa "394 " aa_pro "394 " ali_dna %% (% data :7000 "............ATGGCTAAAGAGAAATTTACTACTGTGTTG---------------TCTGAA---------CTTCGTTCT---TTCGATTCTGGTGCTGCTACTGATGGT------------CCGATG---------CCTGAAGATGCT---------GAGATGAAC------AAA---------GGTTTGGGTGAAGAT---AAGAAATCACACTCT------AAATTCAAGAAA------GAAATC---------------GTTGCA---------CTGCGT---------TTCACTGAAATTATCGAC........................." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MAKEKFTTVL-----SE---LRS-FDSGAATDG----PM---PEDA---EMN--K---GLGED-KKSHS--KFKK--EI-----VA---LR---FTEIID........" %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "StrRamo3" flag :7000 "h" full_name "Streptomyces ramocissimus" aacid "389 " acc "ARB_30F12BA8" tmp "392 " aa "389 " aa_pro "389 " ali_dna %% (% data :7000 "............ATGTCCAAGACGGCATACACCAAGGTCCTC---------------GGGACG---------TTCGTCCCG---TTCGACCGCGGGTCCGCGCTCGACGGG------------ATCATG---------CCGGGCGACGAG---------GAGCTCGAG------TCC---------GGCGCCGGGCTGGAG---------ACCCGGAGT------CGATTCTCGGCC------CGCGTC---------------GTTCCG---------CTGGGG---------TTCACGGCCCTTGTG............................" %) /*ali_dna*/ ali_prot %% (% data :7000 "....MSKTAYTKVL-----GT---FVP-FDRGSALDG----IM---PGDE---ELE--S---GAGLE---TRS--RFSA--RV-----VP---LG---FTALV........." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "StrCoel9" file "[EBI] sctiuf3.em_ba" gcg_id "SCTIUF3" acc "X77040" date "[EBI] 14-JAN-1994 (Rel. 38, Created) 15-MAY-1995 (Rel. 43, Last updated, Version 8)" full_name "Streptomyces coelicolor" tax "[EBI] Eubacteria; Firmicutes; Actinomycetes; Streptomycetes; Streptomycetaceae; Streptomyces." author "[EBI] van Wezel G.P., Woudt L.P., Vervenne R., Verdurmen M.L., Vijgenboom E., Bosch L. van Wezel G.P." title "[EBI] Cloning and sequencing of the tuf genes of Streptomyces coelicolor A3(2)." journal "[EBI] Biochim. Biophys. Acta 1219:543-547(1994). Submitted (05-JAN-1994) to the EMBL/GenBank/DDBJ databases. G.P. Van Wezel, Leiden Uni., Dep. of Biochemistry, PO Box 9502, 2300 RA Leiden, NETHERLANDS" strain "[EBI] M145" aacid "392 " nuc "1179 " db_name "[EBI] Streptomyces coelicolor" gene "[EBI] S.coelicolor tuf3 gene" id "[EBI] SCTIUF3" keywords "[EBI] elongation factor Tu3 tuf3 gene." tmp "395 " aa "392 " aa_pro "392 " ali_dna %% (% data :7000 "............ATGTCCAAGACGGCGTACACCAAGGTCCTC---------------GGCAGCACCACCCAGTACGTTTCG---TTCGACCGCGGGTCCGCGCTGGACGGG------------ATCATG---------CCGGGTGACGAG---------GAGCTGGAG------TCC---------GGGGCGTCCGTCGAG---------ACGGCGCGG------CGTTTCTCGGCG------CGCGTG---------------GTGCCG---------CTGGGC---------TTCACCGCGGTGGAG............................" %) /*ali_dna*/ ali_prot %% (% data :7000 "....MSKTAYTKVL-----GSTTQYVS-FDRGSALDG----IM---PGDE---ELE--S---GASVE---TAR--RFSA--RV-----VP---LG---FTAVE........." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "MucRacem" flag :7000 "h" full_name "Mucor racemosus" aacid "458 " acc "ARB_5ADBD66E" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " ali_dna %% (% data :7000 "............ATGGGTAAAGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCC---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCTGTCGAGAAGGTTAAG------------AAA...." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "MucRace2" flag :7000 "h" full_name "Mucor racemosus" aacid "457 " acc "ARB_3627F120" tmp "444 " exclude "does not align" aa "457 " aa_pro "440 " ali_dna %% (% data :7000 "............ATGGGTAAGGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCC---ATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRS-MCVEAYPLGRFKAVEKVK----K." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "MucRace3" flag :7000 "h" full_name "Mucor racemosus" aacid "458 " acc "ARB_73CEEA74" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " ali_dna %% (% data :7000 "............ATGGGTAAAGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCC---------TTCAAGTACGCC---TGGGTTTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "AbdGlauc" flag :7000 "h" full_name "Absidia glauca" aacid "458 " acc "ARB_A706F312" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " ali_dna %% (% data :7000 "............ATGGGTAAAGAA------ATCTACAAGTGCGGTGAAAAGGAAGCTGGTTCC---------TTCAAGTACGCC---TGGGTGTGCGCTGCCGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCCGAACAACGCTTCAACATGTTGGGATGGAACGGTCCCGCTAACGTC---------ACCACTAAGGAAGCCGGCTCCTTCAACCATCCTGGTCAAATCGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAAAAGGTTGAG------------AAA...." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAAGTGEFEAGISKDGKW-SEQRFNMLGWNGPANV---TTKEAGSFNHPGQIDRRSGMCVEAYPLGRFKAVEKVE----K." %) /*ali_prot*/ %) /*species*/ species :5000 %$ (% name :7600 "CddAlbic" flag :7000 "h" full_name "Candida albicans" aacid "458 " acc "ARB_10F3627F" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " ali_dna %% (% data :7000 "............ATGGGTAAAGAA------ATTTACAAGTGTGGTGAAAAAGAAGCTGGTTCT---------TTCAAATACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATTTCTAAGGATGGTAAATGG---GACAAAAACAGATTTAACATGATTGGTTGGGAAGGTCCAGCTGGTGTT---------ACCACTAAGGGTTGTGACTCTTTCAACCATCCAGGTCAAATTGACAGAAGAACTGGTATGTGTGTTGAAGCTTTCCCATTAGGTAGATTCAAATCTGTTGAAAAATCCAAG------------AAA...." %) /*ali_dna*/ ali_prot %% (% data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-DKN*FNMIGWEGPAGV---TTKGCDSFNHPGQID**TGMCVEAFPLG*FKSVEKSK----K." %) /*ali_prot*/ %) /*species*/ %) /*species_data*/ tree_data %% (% tree_prot %% (% tree "N0.58482,3.41564;N0.58248,0.66885;N0.04119,0.27423;N0.27475,0.31772;LBctFra12\ALCytLyti6\ALTaxOcell\AN0.09705,0.15387;LStrRamo3\ALStrCoel9\AN0.12346,0.12108;N0.07553,0.07358;N0.06787,0.09757;N0.01554,-0.00981;LMucRacem\ALMucRace2\ALMucRace3\ALAbdGlauc\ALCddAlbic\A" nnodes %i 9 ruler %% (% size %f 0.1 RADIAL %% (% ruler_y %f 5.80564 ruler_x %f 0 %) /*RADIAL*/ text_x %f 0 text_y %f 0 ruler_width %i 0 LIST %% (% ruler_y %f 0 ruler_x %f 0 text_x %f 0 text_y %f 0 %) /*LIST*/ %) /*ruler*/ security %i 0 remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']" node %% (% id %i 5 group_name "Eukarya EF-Tu" %) /*node*/ node %% (% id %i 1 group_name "Bacteria EF-Tu" %) /*node*/ order %i 1 %) /*tree_prot*/ tree_prot_opti %% (% tree "N0.673858,0.673858;N0.0262009,0.0851529;N0.0567686,0.0502183;N0.00436681,0.00437637;N0.00218341,0;LMucRace3\ALMucRacem\ALMucRace2\ALAbdGlauc\ALCddAlbic\AN0.171717,0.257653;N0.0227848,0.15736;N0.151899,0.149367;LCytLyti6\ALTaxOcell\ALBctFra12\AN0.0535714,0.059126;LStrCoel9\ALStrRamo3\A" nnodes %i 9 ruler %% (% size %f 0.1 RADIAL %% (% ruler_y %f 5.80564 ruler_x %f 0 %) /*RADIAL*/ text_x %f 0 text_y %f 0 ruler_width %i 0 LIST %% (% ruler_y %f 0 ruler_x %f 0 text_x %f 0 text_y %f 0 %) /*LIST*/ %) /*ruler*/ security %i 0 remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']\n[created as copy of 'tree_prot']" node %% (% id %i 1 group_name "Eukarya EF-Tu" %) /*node*/ node %% (% id %i 5 group_name "Bacteria EF-Tu" %) /*node*/ order %i 2 %) /*tree_prot_opti*/ %) /*tree_data*/ arb_presets %% (% fonts %% (% font0 %% (% family %i 2 style %i 3 size %i 6 %) /*font0*/ font1 %% (% family %i 2 style %i 3 size %i 5 %) /*font1*/ font2 %% (% family %i 0 style %i 0 size %i 0 %) /*font2*/ font3 %% (% family %i 0 style %i 0 size %i 0 %) /*font3*/ font4 %% (% family %i 0 style %i 0 size %i 0 %) /*font4*/ font5 %% (% family %i 0 style %i 0 size %i 0 %) /*font5*/ %) /*fonts*/ div %% (% add_width_xfig %i 2 ruler_len %f 0.1 ruler_width %i 2 ruler_x_offset %f 0 ruler_y_offset %f 0.5 %) /*div*/ tool0 %% (% text "fastdnaml" tool_command "fastdnaml