#       main topics:
UP      arb.hlp
UP      glossary.hlp
UP      mode.hlp

#       sub topics:
SUB     sp_search.hlp
SUB     species_configs.hlp
SUB     colorize.hlp
SUB     mode_mark.hlp
SUB     sp_mark.hlp

# format described in ../help.readme


TITLE		What are Marked Species?

DESCRIPTION	All species have a flag which can be set to FALSE or TRUE.
		All species with the flag set to TRUE are called marked
		species. Normally this flag is used to specify a subgroup of
		species	for editors, tree building programs ...

EXAMPLES	Mark one known species:

			1. Search for the species: <ARB_NT/Species/Search>
			2. Select the species
			3. Mark it

		Mark a list of species

			1. Search for the species: <ARB_NT/species/search>
			2. Press <Mark Listed/Unmark Rest>

		Mark all species in selected tree:

			1. Unmark all species: <ARB_NT/species/unmark all sp>
			2. <ARB_NT/Species/Mark species/Species in Tree/Mark species in Tree>

                     or

                        1. Select the <MARK MODE>
                        2. Press the left mouse button somewhere outside the tree.

		Mark a subtree:

			1. Select the <MARK MODE>
			2. Press the left mouse button at a subtree.

		Mark queried species:

			1. Select 'Search' from the ARB main window
			2. Perform a search
			3. Use 'Mark Listed Unmark Rest' to mark all queried species

		Save/Restore sets of marked species:

			see LINK{species_configs.hlp}