/addsingle
/contrafoldwrap
/countlen
/disttbfast
/dndblast
/dndfast7
/dndpre
/dndpre2
/dvtditr
/f2cl
/getlag
/mafft
/mafft-distance
/mafft-homologs.rb
/mafft-profile
/makedirectionlist
/mccaskillwrap
/multi2hat3s
/pair2hat3s
/pairash
/pairlocalalign
/regtable2seq
/replaceu
/restoreu
/rnatest
/score
/seq2regtable
/setcore
/setdirection
/sextet5
/splittbfast
/tbfast
/version