;D standard DNA scoring matrix 1 45 80 5 6 80 4 -12 -4 * @ 0 1 2 ACGTRYMWSKDHVBN 0 1 2 3 0 1 0 0 1 2 0 0 0 1 0 4 -3 4 -3 -3 4 -3 -3 -3 4 1 -1 1 -1 1 -1 1 -1 1 -3 1 1 1 -2 -2 0 0 1 1 -2 -2 1 0 0 0 1 -2 1 1 -2 0 0 0 0 1 -2 -2 1 1 0 0 0 0 0 1 1 -2 1 1 1 0 0 1 0 1 1 1 1 -2 1 0 1 1 1 0 0 0 1 1 1 1 -2 1 0 1 0 1 0 0 0 1 -2 1 1 1 0 1 0 0 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1