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UP	arb.hlp
UP	glossary.hlp

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#SUB	subtopic.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE		Track alignment changes

OCCURRENCE	ARB_NT/Sequences/Track alignment changes

DESCRIPTION     When called first, a checksum entry is generated for all species with
                data in the selected alignment.
                For alignment 'ali_16s' this entry is named 'checksum_ali_16s'.

                When called again later, the stored checksums are compared with the
                current checksums. If a checksum change is detected, an entry describing the change
                is stored in the field 'seq_history'.

NOTES		The first checksum in the 'checksum_xxx'-entries is calculated with gaps ignored (i.e.
                it reflects changes to the sequence data), the second checksum is calculate using gaps (i.e.
                it reflects changes to the alignment of the sequence).

EXAMPLES	None

WARNINGS	None

BUGS		No bugs known