/*ARBDB ASCII*/ species_data %% (% species :5000 %$ (% name :7600 "CytLyti6" flag :7000 "m" full_name "Cytophaga lytica" short_name "C. lytica" ali_tuf_pro :5000 %% (% data :7500 "....MAKETFDRSKPHLNMGTIGHVDHGKTTLTAAITTVL---------------ANAGLSE---L*SF-DSIDNAPEEKE*GMTINTSHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG----PM---PQTREHILLGRQVGIP*IVVFLNKVDMVDDE---ELLELVEMEV*ELLSFYEYDGDNGPVVSGSALGALN-----GEQKWVDT-----------VMELMEAVDNWIELPKRDVDKDFLMPVEDVFTITGRGTVATGRIETGVANTGDAVDIIGMGADKLASTITGVEMFRKMLD*GEAGDNVGILL*GIEKSQIS*GMVICKPGSVKPHS--KFEAEVYILKK--EEGGRHTPFHNNYRPQFYV*TTDVTGTI------SLPSGVEMVMPGDNLTITVELLSPIA---LSEGLR---FAIREGG*TVGAGQVTKIME..........................." %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGCAAAGGAAACTTTTGATCGTTCCAAACCGCACTTAAATATAGGTACTATTGGACACGTAGATCACGGTAAAACTACTTTAACTGCTGCTATTACAACAGTATTG---------------------------------------------GCAAATGCAGGTCTTTCTGAA---------TTAAGAAGTTTC---GATTCTATCGATAACGCTCCAGAAGAAAAAGAAAGAGGTATAACAATTAATACTTCTCACGTAGAGTATTCAACTGCAAACCGTCACTATGCACACGTAGATTGTCCAGGTCACGCGGATTACGTTAAGAACATGGTAACTGGTGCTGCTCAGATGGATGGTGCTATTTTGGTAGTTGCTGCAACTGATGGT------------CCAATG---------CCTCAAACACGTGAGCACATCTTATTAGGTCGTCAGGTAGGTATTCCAAGAATCGTTGTTTTCTTAAACAAGGTTGATATGGTTGATGATGAA---------GAGCTTTTAGAGCTTGTTGAAATGGAAGTTAGAGAATTACTTTCTTTTTACGAGTATGATGGTGATAATGGTCCTGTTGTTTCTGGTTCTGCTTTAGGTGCACTTAAT---------------GGTGAGCAAAAATGGGTAGATACA---------------------------------GTAATGGAATTGATGGAGGCTGTTGATAACTGGATCGAATTACCAAAGCGTGATGTAGATAAGGATTTCTTAATGCCTGTAGAGGATGTATTTACAATTACAGGTCGTGGAACAGTTGCAACTGGTCGTATTGAAACTGGTGTTGCTAATACAGGTGATGCTGTTGATATCATTGGTATGGGTGCTGATAAATTAGCTTCTACTATTACTGGTGTTGAAATGTTCCGTAAGATATTAGATAGAGGTGAAGCTGGTGATAACGTAGGTATCTTATTAAGAGGTATTGAAAAGTCTCAAATCAGTAGAGGTATGGTAATCTGTAAGCCAGGTTCTGTTAAGCCACACTCT------AAGTTTGAAGCTGAGGTTTATATCTTGAAAAAA------GAAGAAGGTGGTCGTCACACACCATTCCATAATAACTACCGTCCACAGTTTTACGTAAGAACAACGGATGTAACAGGAACTATT------------------AGTCTTCCTTCAGGAGTTGAAATGGTTATGCCTGGTGATAACTTAACTATTACAGTAGAATTATTATCTCCTATTGCA---------CTTAGTGAAGGTTTACGT---------TTTGCAATCCGTGAGGGTGGTAGAACAGTAGGTGCTGGTCAGGTAACTAAGATCATAGAA.................................................................................." %) /*ali_tuf_dna*/ strain "DSM 2039" aacid "395 " acc "ARB_6B3852E" tmp "397 " status "sorted" aa "395 " exclude "double entry" aa_pro "395 " %) /*species*/ species :5000 %% (% name :7600 "TaxOcell" flag :7000 "m" full_name "Taxeobacter ocellatus" short_name "T. ocellatus" ali_tuf_pro :5000 %% (% data :7500 "....MAKETFDRSKPHVNIGTIGHVDHGKTTLTAAITTVL---------------ANKGLAA---KRDF-SSIDNAPEEKERGITINTAHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG----PM---PQTREHILLARQVGVPQLVVFMNKVDMVDDP---ELLELVEMEIRELLSFYDFDGDNIPVVQGSALGGLN-----GDAKWVGT-----------IEQLMDSVDNWIPIPPRLTDQPFLMPVEDVFSITGRGTVATGRIERGVINSGEPVEILGMGAENLKSTVTGVEMFRKILDRGEAGDNVGLLLRGIEKEAIRRGMVICKPGSVTPHK--KFKAEVYVLSK--EEGGRHTPFFNNYRPQFYFRTTDVTGII------SLAEGVEMVMPGDNVTISVELINAVA---MEKGLR---FAIREGGRTVGAGQVTEILD..........................." %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGCTAAAGAAACTTTTGACCGGTCCAAGCCGCACGTAAACATCGGCACGATCGGTCACGTGGACCACGGCAAAACGACTCTGACCGCTGCTATCACCACGGTGCTG---------------------------------------------GCTAACAAAGGTCTGGCCGCT---------AAGCGTGACTTC---TCCTCGATCGACAACGCTCCGGAGGAAAAAGAGCGCGGTATCACCATCAACACCGCTCACGTTGAGTACTCGACCGCTAATCGTCACTACGCTCACGTTGACTGCCCTGGTCACGCTGACTACGTGAAGAACATGGTAACCGGTGCTGCTCAAATGGACGGTGCTATCCTCGTGGTAGCTGCTACCGACGGG------------CCGATG---------CCCCAGACCCGTGAGCACATCCTGCTGGCTCGCCAGGTAGGTGTACCGCAGCTGGTTGTGTTCATGAACAAAGTGGACATGGTGGACGACCCC---------GAGCTGCTCGAACTCGTTGAGATGGAAATCCGCGAGCTGCTGTCGTTCTACGACTTCGACGGTGACAACATCCCGGTAGTGCAAGGTTCGGCTCTCGGCGGCCTGAAC---------------GGCGACGCCAAGTGGGTAGGCACC---------------------------------ATCGAGCAACTGATGGACTCGGTTGACAACTGGATTCCGATTCCCCCGCGTCTGACGGACCAGCCGTTCCTGATGCCGGTAGAAGACGTGTTCTCGATTACCGGCCGTGGCACCGTAGCTACGGGTCGTATCGAGCGCGGCGTAATCAACTCGGGTGAGCCGGTTGAAATCCTCGGTATGGGTGCTGAAAACCTCAAGTCGACCGTAACGGGCGTTGAGATGTTCCGCAAGATCCTTGACCGTGGCGAAGCTGGTGACAACGTAGGTCTGCTGCTCCGTGGTATTGAAAAAGAAGCCATCCGTCGCGGCATGGTTATCTGCAAACCTGGCTCGGTAACCCCCCACAAA------AAGTTCAAGGCTGAAGTTTACGTTCTGTCGAAG------GAAGAAGGTGGCCGTCACACGCCGTTCTTCAACAACTACCGTCCGCAGTTCTACTTCCGCACCACCGACGTTACCGGTATTATC------------------TCGCTGGCTGAAGGCGTAGAAATGGTAATGCCCGGCGACAACGTGACCATCTCGGTTGAGCTGATCAACGCTGTAGCT---------ATGGAGAAAGGCCTGCGC---------TTCGCTATCCGCGAAGGTGGCCGCACGGTAGGTGCCGGTCAGGTAACCGAAATCCTCGAC.................................................................................." %) /*ali_tuf_dna*/ strain "Myx 2105" aacid "395 " acc "ARB_21595EF" tmp "397 " status "sorted" aa "395 " exclude "double entry" aa_pro "395 " %) /*species*/ species :5000 %% (% name :7600 "BctFra12" flag :7000 "h" full_name "Bacteroides fragilis" short_name "B. fragilis" ali_tuf_pro :5000 %% (% data :7500 "....MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKKGLSE---LRS-FDSIDNAPEEKE*GITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDG----PM---PQTREHILLARQVNVPKLVVFMNKCDMVEDA---EMLELVEMEM*ELLSFYDFDGDNTPIIQGSALGALN-----GVEKWEDK-----------VMELMEAVDTWIPLPPRDVDKPFLMPVEDVFSITGRGTVATGRIETGVIHVGDEIEILGLGED-KKSVVTGVEMFRKLLDQGEAGDNVGLLLRGVDKNEIKRGMVLCKPGQIKPHS--KFKAEVYILKK--EEGGRHTPFHNKYRPQFYLRTMDCTGEI------TLPEGTEMVMPGDNVTITVELIYPVA---LNIGLR---FAIREGGRTVGAGQITEIID..........................." %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGCTAAAGAGAAATTTGAACGTACCAAACCGCACGTAAACATTGGTACAATCGGTCACGTTGACCACGGTAAAACCACTTTGACTGCTGCTATCACTACTGTGTTG---------------------------------------------GCAAAGAAAGGTCTTTCTGAA---------CTTCGTTCT---TTCGATTCTATCGATAATGCTCCTGAAGAAAAAGAAAGAGGTATTACTATCAATACTTCACACGTTGAGTATGAAACTGCTAACCGTCACTACGCACACGTTGACTGTCCGGGTCACGCTGACTACGTAAAGAACATGGTTACTGGTGCTGCTCAGATGGACGGTGCTATCATTGTAGTTGCTGCTACTGATGGT------------CCGATG---------CCTCAGACTCGTGAGCACATCCTTTTGGCTCGTCAGGTAAACGTTCCGAAGCTGGTTGTATTCATGAACAAGTGCGATATGGTTGAAGATGCT---------GAGATGTTGGAACTTGTTGAAATGGAAATGAGAGAATTGCTTTCATTCTATGATTTCGACGGTGACAATACTCCGATCATTCAGGGTTCTGCTCTTGGTGCATTGAAC---------------GGCGTAGAAAAATGGGAAGACAAA---------------------------------GTAATGGAACTGATGGAAGCTGTTGATACTTGGATTCCACTGCCTCCGCGCGATGTTGATAAACCTTTCTTGATGCCGGTAGAAGACGTGTTCTCTATCACAGGTCGTGGTACTGTAGCTACAGGTCGTATCGAAACTGGTGTTATCCATGTAGGTGATGAAATCGAAATCCTCGGTTTGGGTGAAGAT---AAGAAATCAGTTGTAACAGGTGTTGAAATGTTCCGCAAACTTCTGGATCAGGGTGAAGCTGGTGACAACGTAGGTCTGTTGCTTCGTGGTGTTGACAAGAACGAAATCAAACGTGGTATGGTTCTTTGTAAACCGGGTCAGATTAAACCTCACTCT------AAATTCAAAGCAGAGGTTTATATCCTGAAGAAA------GAAGAAGGTGGTCGTCACACTCCATTCCATAACAAATATCGTCCTCAGTTCTACCTGCGTACTATGGACTGTACAGGTGAAATC------------------ACTCTTCCGGAAGGAACTGAAATGGTAATGCCGGGTGATAACGTAACTATCACTGTAGAGTTGATCTATCCGGTTGCA---------CTGAACATCGGTCTTCGT---------TTCGCTATCCGCGAAGGTGGACGTACAGTAGGTGCTGGTCAGATTACTGAAATTATCGAC.................................................................................." %) /*ali_tuf_dna*/ aacid "394 " acc "ARB_4560B41C" tmp "396 " status "sorted" aa "394 " aa_pro "394 " %) /*species*/ species :5000 %$ (% name :7600 "StrRamo3" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVL---------------AERGSGT---FVP-FDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDG----IM---PQTAEHVLLARQVGVDHIVVALNKADA-GDE---ELTDLVELEVRDLLSEHGYGGDGAPVVRVSGLKALE-----GDPKWTAS-----------IEALLDAVDTYVPMPERYVDAPFLLPVENVLTITGRGTVVTGAVERGTVRVGNRVEVLGAGLE---TVVTGLETFGKPMDEAQAGDNVALLLRGVPRDAVRRGHVVAAPGSVVPRS--RFSAQVYVLSA--REGGRTTPVTSGYRPQFYIRTADVVGDV------DLGEV-GVARPGETVSMIVELGREVP---LEPGLG---FAIREGG*TVGAGTVTALV............................" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGTCCAAGACGGCATACGTGCGCACCAAACCGCATCTGAACATCGGCACGATGGGTCATGTCGACCACGGCAAGACCACGTTGACCGCCGCCATCACCAAGGTCCTC---------------------------------------------GCCGAGCGTGGCTCCGGGACG---------TTCGTCCCG---TTCGACCGCATCGACCGGGCCCCGGAGGAGGCCGCGCGCGGCATCACCATCAACATCGCGCACGTCGAGTACGAGACCGACACCCGGCACTACGCGCACGTCGACATGCCGGGCCACGCCGACTACGTCAAGAACATGGTCACCGGCGCCGCGCAGCTCGACGGGGCGATCCTCGTCGTCTCCGCGCTCGACGGG------------ATCATG---------CCGCAGACCGCCGAACACGTCCTGCTCGCCCGGCAGGTGGGCGTCGACCACATCGTCGTCGCCCTCAACAAGGCCGACGCG---GGCGACGAG---------GAGCTCACCGACCTCGTCGAGCTGGAGGTCCGCGATCTGCTCTCCGAGCACGGCTACGGCGGCGACGGTGCCCCCGTCGTACGGGTCTCGGGGCTGAAGGCGCTGGAG---------------GGCGACCCCAAGTGGACGGCGTCC---------------------------------ATCGAGGCGCTGCTCGACGCGGTGGACACCTACGTGCCGATGCCGGAGCGGTATGTGGACGCGCCGTTCCTGCTGCCCGTGGAGAACGTGCTCACCATCACCGGTCGGGGGACCGTGGTCACCGGAGCCGTCGAGCGGGGCACCGTGCGCGTGGGCAACCGGGTCGAAGTGCTCGGCGCCGGGCTGGAG---------ACCGTGGTCACCGGCCTGGAGACGTTCGGCAAGCCCATGGACGAGGCGCAGGCCGGGGACAACGTGGCGCTGTTGCTGCGTGGGGTTCCGCGGGACGCCGTACGGCGTGGGCATGTGGTCGCGGCGCCGGGGAGCGTGGTGCCCCGGAGT------CGATTCTCCGCGCAGGTGTATGTGCTCTCGGCC------CGCGAGGGCGGTCGTACGACTCCTGTCACCAGCGGGTATCGGCCGCAGTTCTACATCCGTACGGCGGATGTGGTGGGGGACGTC------------------GACCTGGGGGAGGTG---GGGGTCGCTCGGCCTGGGGAGACGGTTTCGATGATCGTCGAGTTGGGCCGGGAGGTTCCG---------CTGGAGCCCGGGTTGGGG---------TTCGCCATTCGTGAGGGCGGCAGGACCGTGGGGGCGGGGACCGTTACGGCCCTTGTG....................................................................................." %) /*ali_tuf_dna*/ full_name "Streptomyces ramocissimus" aacid "389 " acc "ARB_30F12BA8" tmp "392 " aa "389 " aa_pro "389 " %) /*species*/ species :5000 %% (% name :7600 "StrCoel9" file "[EBI] sctiuf3.em_ba" gcg_id "SCTIUF3" acc "X77040" date "[EBI] 14-JAN-1994 (Rel. 38, Created) 15-MAY-1995 (Rel. 43, Last updated, Version 8)" full_name "Streptomyces coelicolor" tax "[EBI] Eubacteria; Firmicutes; Actinomycetes; Streptomycetes; Streptomycetaceae; Streptomyces." author "[EBI] van Wezel G.P., Woudt L.P., Vervenne R., Verdurmen M.L., Vijgenboom E., Bosch L. van Wezel G.P." title "[EBI] Cloning and sequencing of the tuf genes of Streptomyces coelicolor A3(2)." journal "[EBI] Biochim. Biophys. Acta 1219:543-547(1994). Submitted (05-JAN-1994) to the EMBL/GenBank/DDBJ databases. G.P. Van Wezel, Leiden Uni., Dep. of Biochemistry, PO Box 9502, 2300 RA Leiden, NETHERLANDS" strain "[EBI] M145" ali_tuf_dna :5000 %% (% data :7500 "............ATGTCCAAGACGGCGTACGTCCGCACCAAACCGCATCTGAACATCGGCACGATGGGCCATGTCGACCACGGCAAGACCACCCTGACCGCCGCCATCACCAAGGTCCTC---------------------------------------------GCCGAGCGCGGGGCCGGCAGCACCACCCAGTACGTTTCG---TTCGACCGCATCGACCGCGCCCCGGAGGAGGCGGCGCGCGGCATCACCATCAACATCGCGCACGTCGAGTACGAAACCGACACCCGGCACTACGCCCACGTCGACATGCCCGGCCACGCCGACTACGTCAAGAACATGGTCACCGGCGCCGCCCAGCTCGACGGGGCGATCCTCGTCGTATCCGCGCTGGACGGG------------ATCATG---------CCGCAGACCGCCGAACACGTGCTGCTCGCCCGGCAGGTGGGCGTCGACCACATCGTGGTCGCGCTCAACAAGGCCGACGCG---GGTGACGAG---------GAGCTGACCGACCTGGTCGAGCTGGAGGTGCGCGAACTGCTCACCGCGCACGGCTACGGCGGCGACGCCGTGCCCGTCGTACGGGTCTCGGGGCTGAAGGCCCTGGAG---------------GGCGACCCGCGGTGGACGGCCTCC---------------------------------GTCGAGGCGCTGCTCGACGCCGTGGACACGTACGTGCCCATGCCCGAGCGGTACCTGGACGCGCCGTTCCTGCTGCCGGTGGAGAACGTGCTCACCATCACCGGCCGCGGCACCGTCGTCACCGGCGCCGTCGAGCCGGGCACCGTGCGCGTCGGCGACCGGGTCGAGGTGCTCGGGGCGTCCGTCGAG---------ACGGTCGTCACCGGCCTGGAGACCTTCGGCAAGCCGATGGAGGAGGCGCAGGCCGGGGACAACGTGGCGCTGCTGCTGCGCGGGGTCGCCCGCGACACGGTGCGCCGCGGGCAGGTGGTCGCCGCACCCGGCAGCGTCGTCCCCGCGCGG------CGTTTCCGGGCCCGGGTGTACGTGCTCTCGGCG------CGCGAGGGCGGGCGCTCGACACCGCTCACCACCGGATACCGGCCGCAGTTCTACATCCGCACCGCCGACGTGGTCGGCGACGTG------------------GACCTCGGCGAGGAG---GCCGTCGCCCGGCCCGGGGACACCGTCACCATGACGGTCGAGCTGGGACGGGACGTGCCG---------CTGGAGACGGGGCTCGGC---------TTCGCGATCCGCGAGGGCGGTCGCACCGTGGGGGCGGGGACCGTGACCGCGGTGGAG....................................................................................." %) /*ali_tuf_dna*/ ali_tuf_pro :5000 %% (% data :7500 "....MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVL---------------AERGAGSTTQYVS-FDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDG----IM---PQTAEHVLLARQVGVDHIVVALNKADA-GDE---ELTDLVELEVRELLTAHGYGGDAVPVVRVSGLKALE-----GDPRWTAS-----------VEALLDAVDTYVPMPERYLDAPFLLPVENVLTITGRGTVVTGAVEPGTVRVGDRVEVLGASVE---TVVTGLETFGKPMEEAQAGDNVALLLRGVARDTVRRGQVVAAPGSVVPAR--RFRARVYVLSA--REGGRSTPLTTGYRPQFYIRTADVVGDV------DLGEE-AVARPGDTVTMTVELGRDVP---LETGLG---FAIREGGRTVGAGTVTAVE............................" %) /*ali_tuf_pro*/ aacid "392 " nuc "1179 " db_name "[EBI] Streptomyces coelicolor" gene "[EBI] S.coelicolor tuf3 gene" id "[EBI] SCTIUF3" keywords "[EBI] elongation factor Tu3 tuf3 gene." tmp "395 " aa "392 " aa_pro "392 " %) /*species*/ species :5000 %% (% name :7600 "MucRacem" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASK----K......" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGGTAAAGAG---------------AAGACTCACGTTAACGTCGTCGTCATTGGTCACGTCGATTCCGGTAAATCTACTACTACTGGTCACTTGATTTACAAGTGTGGTGGTATTGATAAGCGTACCATCGAGAAGTTCGAGAAGGAAGCTGCCGAACTCGGTAAGGGTTCT---------TTCAAGTACGCC---TGGGTCCTTGATAAACTTAAGGCTGAACGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACAACGTTACTGTTATTGATGCTCCCGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGTGCTATTCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGTTTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCTTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCATCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCTAAGGAATCTGCCTCTTTCACCGCTCAAGTTATTATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCCGGTAAGAAGATGGAGGATTCTCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCTGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAG------------AAA..................." %) /*ali_tuf_dna*/ full_name "Mucor racemosus" aacid "458 " acc "ARB_5ADBD66E" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " %) /*species*/ species :5000 %$ (% name :7600 "MucRace2" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRS-EKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASK----K......" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGGTAAGGAG---------------AAGACTCACGTTAACGTCGTCGTCATTGGTCACGTCGATTCCGGTAAATCTACTACTACTGGTCACTTGATTTACAAGTGTGGTGGTATTGATAAGCGTACCATCGAGAAGTTCGAGAAGGAAGCTGCCGAACTCGGTAAGGGTTCT---------TTCAAGTACGCT---TGGGTCCTTGATAAACTTAAGGCTGAACGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACAACGTCACCGTTATTGATGCTCCCGGTCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCCGATTGTGCCATTCTTATTATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGTGTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCTTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCACCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTTGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCTAAGGAATCTGCCTCTTTCACCGCTCAAGTTATCATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCC---GAGAAGATGGAGGATTCTCCTAAGTTTGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCCGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAG------------AAA..................." %) /*ali_tuf_dna*/ full_name "Mucor racemosus" aacid "457 " acc "ARB_3627F120" tmp "444 " exclude "does not align" aa "457 " aa_pro "440 " %) /*species*/ species :5000 %% (% name :7600 "MucRace3" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTTKW-SQDRYNEIVKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAID-AIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAV---TTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKASK----K......" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGGTAAAGAG---------------AAGACTCACGTTAACGTTGTCGTTATTGGTCACGTCGATTCCGGTAAGTCCACCACCACTGGTCACTTGATTTACAAGTGTGGTGGTATCGACAAGCGTACCATCGAAGAGTTCGAGAAGGAAGCTGCTGAACTCGGTAAGGGTTCC---------TTCAAGTACGCC---TGGGTTCTTGACAAACTCAAGGCTGAACGTGAGCGTGGTATCACCATCGATATTGCTCTCTGGAAGTTCGAGACCCCCAAGTACAATGTCACTGTCATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGTGCTATTCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAGCACGCTCTTCTTGCCTTCACCTTGGGGTTCCGTCAATTGATTGTTGCTATCAACAAGATGGATACCACCAAGTGG---TCTCAAGATCGTTACAACGAAATCGTCAAGGAAGTTTCCGGTTTCATC---AAGAAGATTGGTTTCAACCCCAAGTCTGTTCCCTTCGTCCCCATCTCTGGCTGGCACGGTGATAACATGTTGGATGAATCCACCAACATGCCCTGGTTCAAGGGATGGAACAAGGAGACCAAGGCTGGTTCCAAGACCGGTAAGACTCTCCTCGAAGCCATCGAT---GCTATTGAGCCCCCTGTCCGTCCCTCCGACAAGCCTCTCCGTCTTCCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTTCCCGTTGGTCGTGTTGAGACTGGTACTATCAAGGCTGGTATGGTTGTCAACTTTGCTCCCGCTGCTGTC---------ACCACCGAAGTCAAGTCCGTCGAAATGCACCACGAAACCCTCACTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGTTCCGACTCCAAGAACGATCCCGCCAAGGAATCTGCCTCTTTCACCGCTCAAGTTATTATCTTGAACCACCCCGGTCAAATCTCTGCTGGTTACGCACCAGTTCTCGATTGTCACACTGCTCACATCGCCTGTAAGTTCTCTGAACTCATTGAGAAGATTGATCGTCGTTCCGGTAAGAAGATGGAGGATAGCCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGGTTCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTATCCTCCTCTTGGTCGTTTCGCTGTCCGTGATATGCGTCAAACCGTCGCTGTCGGTGTCATCAAGGCCGTCGAGAAGGTTGACAAGGCTGGTAAGGTCACCAAGGCCGCTGCCAAGGCTTCCAAG------------AAA..................." %) /*ali_tuf_dna*/ full_name "Mucor racemosus" aacid "458 " acc "ARB_73CEEA74" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " %) /*species*/ species :5000 %% (% name :7600 "AbdGlauc" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCGILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDSTKW-SEQRFNEIIKEVSGFI-KKIGFNPKSVPFVPISGWHGDNMLEESTNMPWYKGWNKETKAGAKSGKTLLDAID-AIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANV---TTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAGKVTKAAAKAGE----K......" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGGTAAAGAA---------------AAGACTCACGTTAACGTCGTTGTCATTGGTCACGTCGATTCTGGTAAATCCACCACCACTGGTCATTTGATCTACAAGTGCGGTGGTATTGACAAGCGTACCATTGAAAAGTTCGAAAAGGAAGCTGCTGAACTCGGTAAGGGTTCC---------TTCAAGTACGCC---TGGGTGTTGGACAAGCTCAAGGCCGAACGTGAACGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAAACCCCCAAGTACCACGTCACCGTCATTGACGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCTCAAGCTGATTGCGGTATTCTTATCATTGCTGCCGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAAACCCGTGAACACGCTTTGTTGGCTTTCACCCTCGGTGTCCGTCAATTGATCGTCGCCATTAACAAGATGGATTCCACCAAGTGG---TCCGAACAACGCTTCAACGAAATCATCAAGGAAGTGTCTGGCTTCATC---AAGAAGATCGGTTTCAACCCCAAGTCTGTCCCCTTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAAGAATCTACCAACATGCCCTGGTACAAGGGATGGAACAAGGAAACCAAGGCTGGTGCCAAGTCTGGCAAGACTCTCTTGGATGCCATCGAT---GCTATTGATCCTCCTCAACGTCCTTCCGACAAGCCCCTCCGTCTCCCTCTTCAAGATGTGTACAAGATCGGTGGTATTGGTACTGTCCCCGTCGGTCGTGTCGAAACTGGTGTCATCAAGGCCGGTATGGTCGTCACCTTCGCTCCCGCTAACGTC---------ACCACTGAAGTCAAGTCCGTCGAAATGCATCACGAACAATTGGTTGAAGGTCTCCCCGGTGACAACGTCGGTTTCAACGTCAAGAACGTCTCCGTCAAGGATATCCGTCGTGGTAACGTCTGCTCTGACTCCAAGAACGACCCCGCCAAGGAAGCCGGCTCCTTCACTGCCCAAGTCATTGTCCTTAACCATCCTGGTCAAATCGGTGCTGGTTACGCTCCTGTCTTGGATTGCCACACTGCTCACATTGCCTGTAAGTTCGCCGAACTCTTGGAAAAGATCGATCGTCGTTCCGGTAAGAAGCTCGAAGATGCTCCCAAGTTCGTCAAGTCTGGTGATTCCGCTATCGTCAAGATGATCCCCTCCAAGCCCATGTGTGTCGAAGCTTACACTGACTACCCTCCTCTTGGTCGTTTCGCCGTCCGTGATATGCGTCAAACCGTCGCTGTTGGTGTCATCAAGGCCGTCGAAAAGGTTGACAAGGCTGGCAAGGTCACCAAGGCTGCTGCCAAGGCTGGCGAG------------AAA..................." %) /*ali_tuf_dna*/ full_name "Absidia glauca" aacid "458 " acc "ARB_A706F312" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " %) /*species*/ species :5000 %$ (% name :7600 "SacCere5" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGS---FKYA-WVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW-DESRFQEIVKETSNFI-KKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV---TTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTEKAAKVTKAAQKAAKK.........." %) /*ali_tuf_pro*/ full_name "Saccharomyces cerevisiae" aacid "458 " acc "ARB_63F7364D" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " %) /*species*/ species :5000 %% (% name :7600 "CddAlbic" flag :7000 "h" ali_tuf_pro :5000 %% (% data :7500 "....MGKE-----KTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDK*TIEKFEKEAAELGKGS---FKYA-WVLDKLKAE*E*GITIDIALWKFETPKYHVTVIDAPGH*DFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQT*EHALLAYTLGVKQLIVAVNKMDSVKW-DKN*FEEIIKETSNFV-KKVGYNPKTVPFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGKVTGKTLLEAID-AIEPPT*PTDKPL*LPLQDVYKIGGIGTVPVG*VETGIIKAGMVVTFAPAGV---TTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEI**GNVCGDSNNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKID**TGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLG*FAV*DM*QTVAVGVIKSVEKSDKAGKVTKAAQKAAK----K......" %) /*ali_tuf_pro*/ ali_tuf_dna :5000 %% (% data :7500 "............ATGGGTAAAGAA---------------AAAACTCACGTTAACGTTGTTGTTATTGGTCACGTCGATTCCGGTAAATCTACTACCACCGGTCACTTAATTTACAAGTGTGGTGGTATCGATAAAAGAACCATTGAAAAATTCGAAAAAGAAGCTGCTGAATTGGGTAAAGGTTCT---------TTCAAATACGCT---TGGGTCTTGGACAAATTGAAGGCTGAAAGAGAAAGAGGTATCACCATTGATATTGCTTTGTGGAAATTCGAAACTCCAAAATACCACGTTACCGTCATTGATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATCACTGGTACTTCTCAAGCTGATTGTGCTATTTTGATTATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATTTCTAAGGATGGTCAAACCAGAGAACACGCTTTGTTGGCTTACACTTTGGGTGTCAAACAATTGATTGTTGCTGTCAACAAGATGGACTCTGTCAAATGG---GACAAAAACAGATTTGAAGAAATCATCAAGGAAACCTCCAACTTCGTC---AAGAAGGTTGGTTACAACCCAAAGACTGTTCCATTCGTTCCAATCTCTGGTTGGAATGGTGACAACATGATTGAACCATCCACCAACTGTCCATGGTACAAGGGTTGGGAAAAGGAAACCAAATCCGGTAAAGTTACTGGTAAGACCTTGTTAGAAGCTATTGAC---GCTATTGAACCACCAACCAGACCAACCGACAAACCATTGAGATTGCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGTACTGTGCCAGTCGGTAGAGTTGAAACTGGTATCATCAAAGCCGGTATGGTTGTTACTTTCGCCCCAGCTGGTGTT---------ACCACTGAAGTCAAGTCCGTTGAAATGCATCACGAACAATTGGCTGAAGGTGTTCCAGGTGACAATGTTGGTTTCAACGTTAAGAACGTTTCCGTTAAAGAAATTAGAAGAGGTAACGTTTGTGGTGACTCCAATAACGATCCACCAAAGGGTTGTGACTCTTTCAATGCCCAAGTCATTGTTTTGAACCATCCAGGTCAAATCTCTGCTGGTTACTCTCCAGTCTTGGATTGTCACACTGCCCACATTGCTTGTAAATTCGACACTTTGGTTGAAAAGATTGACAGAAGAACTGGTAAGAAATTGGAAGAAAATCCAAAATTCGTCAAATCCGGTGATGCTGCTATCGTCAAGATGGTCCCAACCAAACCAATGTGTGTTGAAGCTTTCACTGACTACCCACCATTAGGTAGATTCGCTGTCAGAGATATGAGACAAACCGTTGCTGTTGGTGTCATCAAATCTGTTGAAAAATCCGACAAAGCTGGTAAAGTTACCAAGGCTGCTCAAAAAGCTGCTAAG------------AAA..................." %) /*ali_tuf_dna*/ full_name "Candida albicans" aacid "458 " acc "ARB_10F3627F" tmp "445 " exclude "does not align" aa "458 " aa_pro "441 " %) /*species*/ %) /*species_data*/ tree_data %% (% tree_prot %% (% tree "N0.58482,3.41564;N0.58248,0.66885;N0.04119,0.27423;N0.27475,0.31772;LBctFra12\ALCytLyti6\ALTaxOcell\AN0.09705,0.15387;LStrRamo3\ALStrCoel9\AN0.12346,0.09193;N0.07553,0.07358;N0.06787,0.09757;N0.01554,-0.00981;LMucRacem\ALMucRace2\ALMucRace3\ALAbdGlauc\AN0.17475,0.02915;LSacCere5\ALCddAlbic\A" nnodes %i 10 ruler %% (% size %f 0.1 RADIAL %% (% ruler_y %f 5.80564 ruler_x %f 0 %) /*RADIAL*/ text_x %f 0 text_y %f 0 ruler_width %i 0 LIST %% (% ruler_y %f 0 ruler_x %f 0 text_x %f 0 text_y %f 0 %) /*LIST*/ %) /*ruler*/ security %i 0 remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']" node %% (% id %i 5 group_name "Eukarya EF-Tu" %) /*node*/ node %% (% id %i 1 group_name "Bacteria EF-Tu" %) /*node*/ node %% (% id %i 0 group_name "EF-Tu / EF-1a" %) /*node*/ order %i 1 %) /*tree_prot*/ tree_prot_opti %% (% tree "N0.673858,0.673858;N0.0262009,0.0218341;N0.0567686,0.0502183;N0.00436681,0.00437637;N0.00218341,0;LMucRace3\ALMucRacem\ALMucRace2\ALAbdGlauc\AN0.0633188,0.0742358;LCddAlbic\ALSacCere5\AN0.171717,0.257653;N0.0227848,0.15736;N0.151899,0.149367;LCytLyti6\ALTaxOcell\ALBctFra12\AN0.0535714,0.059126;LStrCoel9\ALStrRamo3\A" nnodes %i 10 ruler %% (% size %f 0.1 RADIAL %% (% ruler_y %f 5.80564 ruler_x %f 0 %) /*RADIAL*/ text_x %f 0 text_y %f 0 ruler_width %i 0 LIST %% (% ruler_y %f 0 ruler_x %f 0 text_x %f 0 text_y %f 0 %) /*LIST*/ %) /*ruler*/ security %i 0 remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']\n[created as copy of 'tree_prot']" node %% (% id %i 1 group_name "Eukarya EF-Tu" %) /*node*/ node %% (% id %i 6 group_name "Bacteria EF-Tu" %) /*node*/ node %% (% id %i 0 group_name "EF-Tu / EF-1a" %) /*node*/ order %i 2 %) /*tree_prot_opti*/ %) /*tree_data*/ arb_presets %% (% fonts %% (% font0 %% (% family %i 2 style %i 3 size %i 6 %) /*font0*/ font1 %% (% family %i 2 style %i 3 size %i 5 %) /*font1*/ font2 %% (% family %i 0 style %i 0 size %i 0 %) /*font2*/ font3 %% (% family %i 0 style %i 0 size %i 0 %) /*font3*/ font4 %% (% family %i 0 style %i 0 size %i 0 %) /*font4*/ font5 %% (% family %i 0 style %i 0 size %i 0 %) /*font5*/ %) /*fonts*/ div %% (% add_width_xfig %i 2 ruler_len %f 0.1 ruler_width %i 2 ruler_x_offset %f 0 ruler_y_offset %f 0.5 %) /*div*/ tool0 %% (% text "fastdnaml" tool_command "fastdnaml