/*ARBDB ASCII*/ genom_db %i 0 presets %% (% alignment :6000 %% (% alignment_name :7600 "ali_mini" alignment_len :7000 %i 187 aligned :7000 %i 1 alignment_write_security :7600 %i 0 alignment_type :7000 "rna" auto_format %i 0 alignment_rem "" %) /*alignment*/ key_data %% (% key %% (% key_name "name" key_type %i 12 key_hidden %i 0 %) /*key*/ key %% (% key_name "acc" key_type %i 12 key_hidden %i 0 %) /*key*/ key %% (% key_name "ali_mini" key_type %i 15 key_hidden %i 0 %) /*key*/ key %% (% key_name "ali_mini/data" key_type %i 12 key_hidden %i 0 %) /*key*/ %) /*key_data*/ use "ali_mini" %) /*presets*/ species_data %% (% species %% (% name :7600 "BcSSSS00" ali_mini %% (% data :7000 "UUUAUCGGAGAGUUUGAUCAAGUCGAGCGG--ACAGA----U--GGGAGCUUGCUCCC-------UGAU--GUUAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGGU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCU" %) /*ali_mini*/ acc "ARB_2CA9F764" %) /*species*/ species %% (% name :7600 "Bl0LLL00" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--ACCGA----C--GGGAGCUUGCUCCC-------UUAG--GUCAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGCU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUC..........." %) /*ali_mini*/ start %i 10 stop %i 20 acc "ARB_6B04C30A" %) /*species*/ species %% (% name :7600 "ClnCorin" ali_mini %% (% data :7000 ".........GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------AUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCGCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGAGAACCUU--GCCUGGCUGGAUCAUC.." %) /*ali_mini*/ acc "ARB_CEB24FD3" %) /*species*/ species %% (% name :7600 "CltBotul" ali_mini %% (% data :7000 "................AUCAAGUCGAG-------CGA----U--GAAGCUUCUUCGGAA------GUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCUCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAG---------------G--U------------------U.." %) /*ali_mini*/ acc "ARB_4FCDD74F" %) /*species*/ species %% (% name :7600 "CPPParap" ali_mini %% (% data :7000 "NNNNNNGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------ACGG--AUUAGCGGC-GGACGGGCCUUCCGAAAGGAAGAUUAAUACCGCAUAAGAUCAGCGAUUGGGGU-AAGUCGUAACAAGGUAGCCGUAGGAGAACCUGCGGNUGGAUCACCUCCUU.." %) /*ali_mini*/ acc "ARB_CF69AC5C" %) /*species*/ species %% (% name :7600 "ClfPerfr" ali_mini %% (% data :7000 "-AAAUUGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUUCCUUCGGGAA----ACGG--AUUAGCGGCGGGACGGGCCUUCAGAACCUGCGGCUGGAUCAUCAUAAUGCAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGCGAAAGGAAGAUUAAUACCCCUCCUUUCU" %) /*ali_mini*/ acc "ARB_5BEE4C92" %) /*species*/ species %% (% name :7600 "DlcTolu2" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAACGA--G-AA-----AGGGAUUGCUUGCAAUCCU------GAG--UAGAGUGGC-GCACGGACUGCCCGAAAGGACAGCUAAUACCGGAUGAA-GAUAAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUUGAGGAAUCAGCGGCUGGAUCACCUCCUUNNN" %) /*ali_mini*/ acc "ARB_815E94DB" %) /*species*/ species %% (% name :7600 "PbcAcet2" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAACGU--G-AA-----A--GGGACUUCGGUCCU--------GAG--UAAAGUGGC-GCACGGACACUUCGAAAGGGGUGCUAAUACCGGAUAAG-GGUAACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" %) /*ali_mini*/ acc "ARB_CC2D184F" %) /*species*/ species %% (% name :7600 "PbrPropi" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAACGG--G-AUU----A--AGGGGCUUGCUCCU--------UAA--UCUAGUGGC-GCACGGACACUUCGAAAGAGGUGCUAAUACCUGAUAAG-GGUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" %) /*ali_mini*/ acc "ARB_2B59EE6C" %) /*species*/ species %% (% name :7600 "Stsssola" ali_mini %% (% data :7000 "AAACUGG-AGAGUUUGAUCAAGUCGAACGU--G-AA-----A-----GUCUUCGGGAU--------GAG--UAAAGUGGC-GCACGGACGGCUGGAAACGGUCGCUAAUACCGGAUAAC-AAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUU.." %) /*ali_mini*/ acc "ARB_219182CE" %) /*species*/ species %% (% name :7600 "DsssDesu" ali_mini %% (% data :7000 "-AACUGG-AGAGUUUGAUCAAGUCGUACGA--G-AA-----AGGGG----CUUCGGCCCU------GAG--UAGAGUGGC-GCACGGACUCUGCGAAAGUGGAGCUAAUACCGGAUACA-G--------------A--------------------------------------------------G" %) /*ali_mini*/ acc "ARB_2F95EE99" %) /*species*/ species %% (% name :7600 "LgtLytic" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAACGGCAG-CACAGUCU--AGCUUGCUAGACGG--------GUG--GCGAGNGGC-GAACGGACUUGGGGAAACUCAAGCUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUN..." %) /*ali_mini*/ acc "ARB_470564F9" %) /*species*/ species %% (% name :7600 "DcdNodos" ali_mini %% (% data :7000 "......AACUGAAGAGUUUGAUCAAGUCGAACGGGGUUAUGU----AGCUUGCUAUGUAA-----------CCUAGUGGC-GGACGGACGUAUGGAAACGUACGCUAAUACCGCAUAAG-GAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUU." /* unformatted sequence (shorter than ali) */ %) /*ali_mini*/ acc "ARB_30B40050" %) /*species*/ species %% (% name :7600 "FrhhPhil" ali_mini %% (% data :7000 "UUG-----AAGAGUUGAUCAAGUCGAACGG--U-AA-----C--AGGUCUUCGGAUGC--------UGA--CGA-GUGGC-GGACGGCCAGUUGGAAACGACUGUUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAAUGGUAGCCGUA-GGGAACCUGCGGCUGGAUCACCUCCUU..." %) /*ali_mini*/ acc "ARB_948948A3" %) /*species*/ species %% (% name :7600 "PsAAAA00" ali_mini %% (% data :7000 "N-----UACUGAAGAGUUUGAUCAAGUCGAGCGGAUG---AAGGG-AGCUUGCUCCUGGAUUC--------A---GCGGC-GGACGGACGUCCGGAAACGGGCGCUAAUACCGCAUACG-CAU------G--G------UAACAA-GG------------AA----C---C------------UG.." %) /*ali_mini*/ acc "ARB_AEBB7869" %) /*species*/ species %% (% name :7600 "PslFlave" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGGU...AGGGG-----AGCUUGCUCCCUGA--------UUC-----AGCGGC-GGACGGACGUUUCGAAAGGAACGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCU...." %) /*ali_mini*/ acc "ARB_1763CF6" %) /*species*/ species %% (% name :7600 "HllHalod" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--A-AACGAUGG--AAGCUUGCUUCCAG--------GCG--UCGAGCGGC-GGACGGACCUGGGGAAACUCAGGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUU..." %) /*ali_mini*/ acc "ARB_2180C521" %) /*species*/ species %% (% name :7600 "VbrFurni" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGCGACA-ACAUUGAACCUUCGGGGGAUUUGUUGGGCGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." %) /*ali_mini*/ start %i 20 stop %i 170 acc "ARB_4C6C9E8C" %) /*species*/ species %% (% name :7600 "VblVulni" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGAAACUUG------UUUCUCGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." %) /*ali_mini*/ acc "ARB_4E1D58F9" %) /*species*/ species %% (% name :7600 "VbhChole" ali_mini %% (% data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGGAACUUG------UUCCUUGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUAAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." %) /*ali_mini*/ acc "ARB_FD102EA4" %) /*species*/ species %% (% name :7600 "AclPleur" ali_mini %% (% data :7000 "UG----AAUUGAAGAGUUUGAUCAAGUCGAACGGUAACGGGAAGGGAGCUUGCUUUCUUUGCCG-------ACGAGUGGC-GGACGGACUACGGGAAACUGUAGCUAAUACCGCGUAAU-CAUGACUGGGGUGAAGUCGUAGCAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." %) /*ali_mini*/ acc "ARB_9E1D1B16" %) /*species*/ species %% (% name :7600 "PtVVVulg" ali_mini %% (% data :7000 "U-----AAUUGAAGAGUUUGAUCAAGUCGAGCGGU...AGGAGAA-AGCUUGCUUUCUUGCUG--------ACGAGCGGC-GGACGGACUACUGGAAACGGUGGCUAAUACCGCAUGAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." %) /*ali_mini*/ acc "ARB_ED8B86F" %) /*species*/ %) /*species_data*/ extended_data :7000 %% (% extended %% (% name :7000 "ECOLI" errors %i 0 acc "J01695" full_name "Escherichia coli" ali_mini %% (% data :7000 ".AAAUUGAAGAGUUUGAUCAUG----UCGAGCGGGCGGAACACAUGCAAAGCUUGCUUCUUUGCG------ACGAGUGGC-GGACGGGUGAGGGGAAACGGUAGCUAAUACCGCAUAAC-GAUGACUAAAGUUAAUACCUAUUGA-CGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAG.." %) /*ali_mini*/ %) /*extended*/ %) /*extended_data*/ tree_data :7000 %% (% tree_ph_24306 %% (% tree "N0.03618,0.03618;N0.04082,0.06452;N0.0404,0.28364;N0.0473,0.2638;N0.06826,0.13072;N0.09494,0.11285;LHllHalod\ALLgtLytic\ALPslFlave\AN0.04416,0.07602;N0.02484,0.01242;LVbhChole\ALVblVulni\ALVbrFurni\AN0.13971,0.16265;N0.02,0.35135;N0.07947,0.09524;LClnCorin\ALCPPParap\ALCltBotul\ALClfPerfr\AN0.28846,0.2;N0.06844,0.10559;N0.06211,0.58369;N0.09357,0.06548;LAclPleur\ALPtVVVulg\ALPsAAAA00\ALDcdNodos\ALFrhhPhil\AN0.19802,0.06369;N0.04192,0.02516;LBcSSSS00\ALBl0LLL00\AN0.04516,0.04487;N0.03974,0.04516;N0.09717,0.10759;N0.10726,0.77778;LDlcTolu2\ALDsssDesu\ALStsssola\ALPbcAcet2\ALPbrPropi\A" nnodes %i 21 remark "PRG=neighbor CORR=F84 FILTER=none PKG=phylip\n\nSun Aug 22 21:38:37 2010: Loaded from outtree\n\nTree loaded from 'outtree' on Sun Aug 22 21:38:37 2010\nSun Aug 22 22:01:06 2010: tree_ph_24306 saved to /home/ralf/data/db/ph_24306.tree\nSun Aug 22 22:02:33 2010: Loaded from /home/ralf/data/db/ph_24306.tree\n" security %i 0 ruler %% (% size %f 0.1 LIST %% (% ruler_y %f 0 ruler_x %f 0 text_x %f 0 text_y %f 0 %) /*LIST*/ ruler_width %i 0 %) /*ruler*/ %) /*tree_ph_24306*/ %) /*tree_data*/ focus %% (% tree_name "tree_ph_24306" %) /*focus*/ description "db for unit-test pt-server" checks %% (% check "fix gene_data" check "fix_dict_compress" check "del_mark_move_REF" check "duplicated_item_colors" %) /*checks*/