%time cumsecs #call ms/call name 8 22.3 990.433893803 0.25 _PT_add_to_chain__FP11PTMM_structP15POS_TREE_structiN23 8 16.6 1726.244314622 0.17 _PT_size_of_chain_entries__FPc 8 15.7 2424.41499924499 0.00 _PT_WRITE_CHAIN_ENTRY__FPciN32 6.8 2726.47 mcount 8 6.3 3007.72 92977 3.02 _gb_uncompress_huffmann 2 4.0 3183.04141270061 0.00 _PT_read_son__FP11PTMM_structP15POS_TREE_struct13PT_bases_enum # 3.8 3353.43116684550 0.00 _get_abs_align_pos__FPci 8 2.9 3483.37 1 129940.00 _enter_stage_1_build_tree__FP14struct_PT_mainPc # 2.2 3581.45100836149 0.00 _PT_read_type__FP15POS_TREE_struct 2.2 3677.934585865 0.02 _build_pos_tree__FP15POS_TREE_structiN32 2.2 3774.28 92977 1.04 _gb_uncompress_equal_bytes 1.9 3859.457931292 0.01 _memcpy 1.6 3931.014647722 0.02 _strlen 1.3 3986.894514357 0.01 _PT_create_leaf__FP11PTMM_structPP15POS_TREE_struct13PT_bases_enumiN24 0.9 4027.9023260153 0.00 _strncmp 0.9 4066.6312233324 0.00 _PT_change_father__FP15POS_TREE_structN21 0.8 4103.223404352 0.01 _PTD_write_node_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structPil 0.8 4139.5016747687 0.00 _PTM_get_mem__Fi 0.8 4175.5316747686 0.00 _PTM_free_mem__FPci 0.7 4207.7612233324 0.00 _PT_GET_CODE2__FP15POS_TREE_structi 0.6 4236.561808631 0.02 _bzero 0.6 4264.154593186 0.01 _PTD_write_leafs_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structiPiT5 0.4 4283.71 ___dt__14GB_transactionFv 0.4 4300.9916237136 0.00 _memset 0.4 4317.44 _malloc 0.4 4333.73 420819 0.04 _PTD_write_chain_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structl 0.3 4348.184514382 0.00 _PTD_clear_fathers__FP11PTMM_structP15POS_TREE_struct 0.3 4362.33 _free 0.2 4371.343404352 0.00 _PT_change_leaf_to_node__FP11PTMM_structP15POS_TREE_struct 0.2 4379.87 3576 2.39 _probe_compress_sequence__FPc 0.1 4385.844514357 0.00 _PTD_set_object_to_saved_status__FP15POS_TREE_structli 0.1 4391.754021272 0.00 _gb_give_buffer 0.1 4397.51 689186 0.01 _PTD_write_tip_to_disk__FP6_iobufP11PTMM_structP15POS_TREE_structl 0.1 4401.28 4448 0.85 _write 0.1 4404.59 92978 0.04 _gb_build_uncompress_tree 0.1 4407.511297822 0.00 _gbm_get_mem 0.1 4410.321811075 0.00 .umul 0.1 4412.80 420819 0.01 _PT_leaf_to_chain__FP11PTMM_structP15POS_TREE_struct 0.0 4414.93 8701 0.24 _gb_read_bin_rek 0.0 4417.001808631 0.00 _calloc 0.0 4419.04 _realloc 0.0 4420.991238445 0.00 _gbm_free_mem 0.0 4422.591187083 0.00 _PT_read_apos__FP11PTMM_structP15POS_TREE_struct 0.0 4424.14 393395 0.00 _GB_find 0.0 4425.611238445 0.00 _gb_free_compress_tree 0.0 4426.731187083 0.00 _PT_read_rpos__FP11PTMM_structP15POS_TREE_struct 0.0 4427.541187083 0.00 _PT_read_name__FP11PTMM_structP15POS_TREE_struct 0.0 4428.35 89400 0.01 _probe_read_alignment__FiPi 0.0 4429.07 92976 0.01 _probe_read_string_append_point__FP17gb_data_base_typePi 0.0 4429.74 100139 0.01 _GB_read_char_pntr 0.0 4430.32 100130 0.01 _GB_read_string 0.0 4430.83 150371 0.00 _PTD_put_short__FP6_iobufUl 0.0 4431.26 55732 0.01 _gb_link_entry 0.0 4431.67 2447 0.17 _sbrk 0.0 4432.06 229078 0.00 _strcmp 0.0 4432.41 92977 0.00 _gb_uncompress_bytes 0.0 4432.69 92976 0.00 _GB_read_string_count 0.0 4432.96 551 0.49 _read 0.0 4433.21 126091 0.00 _gbs_malloc_copy 0.0 4433.45 57918 0.00 _PTD_put_int__FP6_iobufUl 0.0 4433.63 92977 0.00 _gb_give_buffer2 0.0 4433.80 92977 0.00 _gb_give_other_buffer 0.0 4433.94 47031 0.00 _gb_make_entry 0.0 4434.07 92996 0.00 .rem 0.0 4434.18 32807 0.00 _gb_read_in_long 0.0 4434.23 1287 0.04 __doprnt 0.0 4434.26 8701 0.00 _gb_make_container 0.0 4434.29 1 30.00 _probe_read_alignments__Fv 0.0 4434.31 3167 0.01 __flsbuf 0.0 4434.33 4 5.00 _close 0.0 4434.35 3596 0.01 _gbs_hash_index 0.0 4434.37 1281 0.02 _printf 0.0 4434.39 3793 0.01 _strcpy 0.0 4434.40 .div 0.0 4434.41 3576 0.00 _GBS_write_hash_no_strdup 0.0 4434.42 7152 0.00 _GBT_next_species 0.0 4434.43 1 10.00 _PT_init_count_bits__Fv 0.0 4434.44 4449 0.00 __xflsbuf 0.0 4434.45 5107 0.00 _fread 0.0 4434.46 3 3.33 _fstat 0.0 4434.47 6 1.67 _open 0.0 4434.48 3790 0.00 _strdup 0.0 4434.48 5107 0.00 .mul 0.0 4434.48 3146 0.00 .udiv 0.0 4434.48 310 0.00 .udiv_o3 0.0 4434.48 702 0.00 .urem 0.0 4434.48 2 0.00 _GBS_create_hash 0.0 4434.48 1 0.00 _GBS_find_lib_file 0.0 4434.48 4 0.00 _GBS_find_string 0.0 4434.48 1 0.00 _GBS_read_arb_tcp 0.0 4434.48 9 0.00 _GBS_string_cmp 0.0 4434.48 1 0.00 _GBS_string_eval 0.0 4434.48 20 0.00 _GBS_write_hash 0.0 4434.48 1 0.00 _GBT_find_extended 0.0 4434.48 1 0.00 _GBT_find_species 0.0 4434.48 2 0.00 _GBT_first_species 0.0 4434.48 1 0.00 _GBT_get_default_alignment 0.0 4434.48 1 0.00 _GBT_get_default_ref 0.0 4434.48 1 0.00 _GBT_read_sequence 0.0 4434.48 5 0.00 _GB_begin_transaction 0.0 4434.48 5 0.00 _GB_commit_transaction 0.0 4434.48 1 0.00 _GB_get_father 0.0 4434.48 1 0.00 _GB_install_command_table 0.0 4434.48 2 0.00 _GB_install_pid 0.0 4434.48 1 0.00 _GB_login 0.0 4434.48 1 0.00 _GB_open 0.0 4434.48 2 0.00 _GB_search 0.0 4434.48 1 0.00 _GB_set_mode_of_file 0.0 4434.48 26 0.00 _PTD_debug_nodes__Fv 0.0 4434.48 76 0.00 _PTD_save_partial_tree__FP6_iobufP11PTMM_structP15POS_TREE_structPcilPi 0.0 4434.48 26 0.00 _PTM_debug_mem__Fv 0.0 4434.48 1 0.00 _PT_build_species_hash__Fv 0.0 4434.48 25 0.00 _PT_inc_base_string_count__FPccT2i 0.0 4434.48 1 0.00 _PT_init__Fi 0.0 4434.48 1 0.00 _PT_init_base_string_counter__FPcci 0.0 4434.48 1 0.00 ___ct__12BI_ecoli_refFv 0.0 4434.48 3 0.00 ___dl__FPv 0.0 4434.48 1 0.00 ___dtors__Fv 0.0 4434.48 5 0.00 ___nw__FUi 0.0 4434.48 310 0.00 ___quorem10000 0.0 4434.48 1 0.00 ___start_libm 0.0 4434.48 1 0.00 ___sti__PT_main_cxx_pt_init_main_struct_ 0.0 4434.48 551 0.00 __filbuf 0.0 4434.48 4 0.00 __findbuf 0.0 4434.48 6 0.00 __findiop 0.0 4434.48 1 0.00 __main 0.0 4434.48 2 0.00 __wrtchk 0.0 4434.48 1 0.00 _arb_trace_argv 0.0 4434.48 1 0.00 _chmod 0.0 4434.48 1 0.00 _exit 0.0 4434.48 1 0.00 _exit__12BI_ecoli_refFv 0.0 4434.48 4 0.00 _fclose 0.0 4434.48 4 0.00 _fflush 0.0 4434.48 32 0.00 _fgets 0.0 4434.48 6 0.00 _fopen 0.0 4434.48 6 0.00 _freopen 0.0 4434.48 1 0.00 _gb_build_compress_list 0.0 4434.48 5 0.00 _gb_commit_transaction_local_rek 0.0 4434.48 10 0.00 _gb_do_callback_list 0.0 4434.48 1 0.00 _gb_init_gb 0.0 4434.48 1 0.00 _gb_make_gb_main_type 0.0 4434.48 1 0.00 _gb_read_bin 0.0 4434.48 5 0.00 _gb_untouch 0.0 4434.48 1 0.00 _gbcm_login 0.0 4434.48 1 0.00 _gbl_install_standard_commands 0.0 4434.48 1 0.00 _gbs_build_replace_string 0.0 4434.48 16 0.00 _gbs_chrcat 0.0 4434.48 1 0.00 _gbs_compress_command 0.0 4434.48 1 0.00 _gbs_strcat 0.0 4434.48 1 0.00 _gbs_strclose 0.0 4434.48 1 0.00 _gbs_strncat 0.0 4434.48 1 0.00 _gbs_stropen 0.0 4434.48 9 0.00 _getenv 0.0 4434.48 1 0.00 _getpagesize 0.0 4434.48 2 0.00 _getpid 0.0 4434.48 1 0.00 _init__12BI_ecoli_refFPcl 0.0 4434.48 4 0.00 _ioctl 0.0 4434.48 4 0.00 _isatty 0.0 4434.48 1287 0.00 _localeconv 0.0 4434.48 1 0.00 _main 0.0 4434.48 32 0.00 _memccpy 0.0 4434.48 1281 0.00 _memchr 0.0 4434.48 1 0.00 _on_exit 0.0 4434.48 1 0.00 _probe_read_data_base__FPc 0.0 4434.48 1 0.00 _profil 0.0 4434.48 1 0.00 _pt_init_main_struct__FP14struct_PT_mainPc 0.0 4434.48 6 0.00 _sprintf 0.0 4434.48 13 0.00 _strchr 0.0 4434.48 3 0.00 _strpbrk 0.0 4434.48 2 0.00 _strrchr 0.0 4434.48 3 0.00 _strspn 0.0 4434.48 4 0.00 _strtok