ID ! (none), T=U ! Replace all T's by U's, :T=U:t=u A. BBB ! Replace first word by its first letter plus '.', :?* *=?1. *2 AA. BBB ! Replace first word by its first two letters plus '.', :??* *=?1?2. *2 SHOW a-b ! Show position 125 - 150, |mid(125,150) HEAD 20 ! Show position 0 - 20, |head(20) TAIL 20 ! Show 20 last positions, |tail(20) CNT(A) ! Count all 'A's, |count(aA) CNT(ACGT) ! Count all 'ACGTU', |count("ACGTU") CNT ambi ! Count all small letters + ambiguous codes + '.', |len("-ACGTU") CNT ambi2 ! Count ambiguous c. + 'acgtu.' in range [100..len-100], |mid(100,-99)|len("-ACGTU") G+C ! G+C content, |count("gcGC");count("agctuAGCTU")|per_cent CHECKALL ! Overall Checksum, |checksum CHECKBAS ! Checksum (no gaps), |checksum(exclude=.-n;touppper) DIFFECOLI ! Difference to ecoli sequence, |diff(SAI=ECOLI) TAXONOMY ! Taxonomy of species, |taxonomy(1)