CNT_NUCS ! count nucleotides, nuc#|sequence|count("agctuAGCTU") CNT_NUCS_TERM ! count nucleotides gene, nuc_term#|sequence|filter(SAI=ECOLI,exclude=.-)|count("ACGTU") CNT_AACIDS ! count amino acids, aa#|sequence|count("ACDEFGHIKLMNPQRSTVWYacdefghiklmnpqrstvwy") GC_CONT ! calculate G+C content, GC#|sequence|count("gcGC");count("agctuAGCTU")|"G+C:";per_cent GC_CONTH ! calculate G+C content helical parts only, GCH#|sequence|filter(SAI=HELIX;exclude=.-)|count("gcGC");count("agctuAGCTU")|"GCH=";per_cent;"(";cut(2);")" GC_CONTNH ! calculate G+C content non helical parts only, GCN#|sequence|filter(SAI=HELIX;include=.-)|count("gcGC");count("agctuAGCTU")|"GCN=";per_cent;"(";cut(2);")"