# -*- Autoconf -*- # Process this file with autoconf to produce a configure script. AC_INIT([PhyML],esyscmd([sh -c "date \"+%Y%m%d\" | tr -d '\n'"]),[s.guindon@auckland.ac.nz]) AM_INIT_AUTOMAKE([foreign]) m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES]) AC_CONFIG_SRCDIR([src/simu.c],[doc/phyml-manual.tex]) AC_CONFIG_HEADERS([config.h]) AC_DEFINE([UNIX],[1],[Unix tag on]) AC_DEFINE([DEBUG],[1],[Debug tag on]) AM_INIT_AUTOMAKE AC_CANONICAL_HOST AC_PROG_CC([gcc]) # Checks for libraries. AC_CHECK_LIB([m], [log]) # Checks for header files. AC_HEADER_STDC AC_CHECK_HEADERS([float.h stdlib.h string.h unistd.h]) # Checks for typedefs, structures, and compiler characteristics. AC_C_CONST AC_C_INLINE AC_TYPE_SIZE_T # Check for presence of LaTeX and pdfLaTeX AC_CHECK_PROGS([PDFLATEX], pdflatex, [/bin/false]) AC_CHECK_PROGS([LATEX], latex, [/bin/false]) if test "x$PDFLATEX" = x/bin/false || test "x$LATEX" = x/bin/false; then enable_docs=no AC_MSG_WARN([Documentation will not be built!]) fi AM_CONDITIONAL([HAVE_PDFLATEX], test -n "$PDFLATEX") # Checks for library functions. AC_FUNC_MALLOC AC_FUNC_REALLOC AC_FUNC_SETVBUF_REVERSED AC_FUNC_VPRINTF AC_CHECK_FUNCS([floor pow rint sqrt strchr strstr]) # Thanks to Shane Sturrock from Biomatters #case "${host}" in #*darwin*) #AM_INIT_AUTOMAKE([no-dependencies]) #ARCH_flag="-arch i386 -arch ppc -arch x86_64 -mmacosx-version-min=10.4" #;; #esac dnl CFLAGS="-O3 -fomit-frame-pointer -funroll-loops -Wall ${ARCH_flag}" dnl CFLAGS="-O3 -Wfloat-equal -fomit-frame-pointer -funroll-loops" dnl CFLAGS="-O3 -Wfloat-equal" dnl CFLAGS="-g" LDFLAGS="${ARGC_flag}" dnl LT_INIT dnl AC_PROG_LIBTOOL dnl Add option for compiling with debugging informations AC_ARG_ENABLE([debug], [AS_HELP_STRING([--enable-debug], [Remove optimization options and add debug informations.])]) AS_IF([test "x$enable_debug" = "xyes"], [CFLAGS="-ansi -pedantic -Wall -std=c99 -O0 -g"], [CFLAGS="-Wall -O2 -msse -fomit-frame-pointer -funroll-loops ${ARCH_flag}"]) AC_ARG_ENABLE([gprof], [AS_HELP_STRING([--enable-gprof], [Remove optimization options and add profiling informations.])]) AS_IF([test "x$enable_gprof" = "xyes"], [CFLAGS="-ansi -pedantic -Wall -std=c99 -O0 -g -pg"], [AS_IF([test "x$enable_debug" = "xno"],[CFLAGS="-Wall -O2 -msse -fomit-frame-pointer -funroll-loops ${ARCH_flag}"])]) AC_ARG_ENABLE([mpi], [AS_HELP_STRING([--enable-mpi], [Compile with mpicc instead of gcc.])]) AS_IF([test "x$enable_mpi" = "xyes"],[CC="mpicc"]) AS_IF([test "x$enable_mpi" = "xyes"],AC_DEFINE([MPI],[1],[MPI tag on])) AM_CONDITIONAL([WANT_MPI], [test "x$enable_mpi" = "xyes"]) AC_ARG_ENABLE([win], [AS_HELP_STRING([--enable-win], [Compile with mingw instead of gcc.])]) AS_IF([test "x$enable_win" = "xyes"],[CC="i586-mingw32msvc-cc"]) AC_ARG_ENABLE([phytime],[AS_HELP_STRING([--enable-phytime],[Compile PhyTime])],[phytime=yes],[phytime=no]) AM_CONDITIONAL([WANT_PHYTIME], [test "$phytime" = yes]) if test "$phytime" = yes; then AC_DEFINE([PHYTIME],[1],[PHYTIME tag on]) fi AC_ARG_ENABLE([tiporder],[AS_HELP_STRING([--enable-tiporder],[Compile tiporder])],[tiporder=yes],[tiporder=no]) AM_CONDITIONAL([WANT_TIPORDER], [test "$tiporder" = yes]) if test "$tiporder" = yes; then AC_DEFINE([TIPORDER],[1],[TIPORDER tag on]) fi AC_ARG_ENABLE([part],[AS_HELP_STRING([--enable-part],[Compile Part])],[part=yes],[part=no]) AM_CONDITIONAL([WANT_PART], [test "$part" = yes]) if test "$part" = yes; then AC_DEFINE([PART],[1],[PART tag on]) fi AC_ARG_ENABLE([rwrap],[AS_HELP_STRING([--enable-rwrap],[Compile Rwrap])],[rwrap=yes],[rwrap=no]) AM_CONDITIONAL([WANT_RWRAP], [test "$rwrap" = yes]) if test "$rwrap" = yes; then AC_DEFINE([RWRAP],[1],[RWRAP tag on]) fi AC_ARG_ENABLE([phycont],[AS_HELP_STRING([--enable-phycont],[Compile PhyCont])],[phycont=yes],[phycont=no]) AM_CONDITIONAL([WANT_PHYCONT], [test "$phycont" = yes]) if test "$phycont" = yes; then AC_DEFINE([PHYCONT],[1],[PHYCONT tag on]) fi AC_ARG_ENABLE([m4],[AS_HELP_STRING([--enable-m4],[Compile M4])],[m4=yes],[m4=no]) AM_CONDITIONAL([WANT_M4], [test "$m4" = yes]) if test "$m4" = yes; then AC_DEFINE([M4],[1],[m4 tag on]) fi AC_ARG_ENABLE([rf],[AS_HELP_STRING([--enable-rf],[Compile RF])],[rf=yes],[rf=no]) AM_CONDITIONAL([WANT_RF], [test "$rf" = yes]) if test "$rf" = yes; then AC_DEFINE([RF],[1],[RF tag on]) fi AC_ARG_ENABLE([test],[AS_HELP_STRING([--enable-test],[Compile test])],[test=yes],[test=no]) AM_CONDITIONAL([WANT_TEST], [test "$test" = yes]) if test "$test" = yes; then AC_DEFINE([TEST],[1],[TEST tag on]) fi AC_ARG_ENABLE([evolve],[AS_HELP_STRING([--enable-evolve],[Compile evolve])],[evolve=yes],[evolve=no]) AM_CONDITIONAL([WANT_EVOLVE], [test "$evolve" = yes]) if test "$evolve" = yes; then AC_DEFINE([EVOLVE],[1],[EVOLVE tag on]) fi AC_ARG_ENABLE([sergeii],[AS_HELP_STRING([--enable-sergeii],[Compile sergeii])],[sergeii=yes],[sergeii=no]) AM_CONDITIONAL([WANT_SERGEII], [test "$sergeii" = yes]) if test "$sergeii" = yes; then AC_DEFINE([SERGEII],[1],[SERGEII tag on]) fi AC_ARG_ENABLE([geo],[AS_HELP_STRING([--enable-geo],[Compile geo])],[geo=yes],[geo=no]) AM_CONDITIONAL([WANT_GEO], [test "$geo" = yes]) if test "$geo" = yes; then AC_DEFINE([GEO],[1],[GEO tag on]) fi AC_ARG_ENABLE([checkpoint],[AS_HELP_STRING([--enable-checkpoint],[Compile checkpoint])],[checkpoint=yes],[checkpoint=no]) AM_CONDITIONAL([WANT_CHECKPOINT], [test "$checkpoint" = yes]) if test "$checkpoint" = yes; then AC_DEFINE([CHECKPOINT],[1],[CHECKPOINT tag on]) fi if test "$phytime" = no; then if test "$tiporder" = no; then if test "$part" = no; then if test "$rwrap" = no; then if test "$phycont" = no; then if test "$m4" = no; then if test "$test" = no; then if test "$sergeii" = no; then if test "$geo" = no; then if test "$evolve" = no; then if test "$checkpoint" = no; then AC_DEFINE([PHYML],[1],[PHYML tag on]) fi fi fi fi fi fi fi fi fi fi fi AC_CONFIG_FILES([Makefile src/Makefile doc/Makefile]) AC_OUTPUT