/*ARBDB ASCII*/
window			%% (%
	font			"8x13bold"
	foreground		"Black"
	background		"#dfd"
	color_1			"navy"
	color_2			"blue"
	color_3			"grey"
	ARB_EDIT		%% (%
		horizontal_page_increment		%i 50
		vertical_page_increment		%i 50
		scroll_delay_vertical		%i 20
		scroll_delay_horizontal		%i 20
		scroll_width_horizontal		%i 9
		scroll_width_vertical		%i 20
		%) /*ARB_EDIT*/

	windows			%% (%
		ARB_EDIT		%% (%
			width			%i 764
			height			%i 671
			posx			%i 106
			posy			%i 127
			%) /*ARB_EDIT*/

		EDIT_SEARCH		%% (%
			width			%i 455
			height			%i 305
			posx			%i 677
			posy			%i 0
			%) /*EDIT_SEARCH*/

		EDIT_REPLACE		%% (%
			width			%i 455
			height			%i 410
			posx			%i 682
			posy			%i 0
			%) /*EDIT_REPLACE*/

		COMPLEMENT__and__REVERS		%% (%
			width			%i 450
			height			%i 245
			posx			%i 686
			posy			%i 0
			%) /*COMPLEMENT__and__REVERS*/

		CREATE_SEQUENCE		%% (%
			width			%i 280
			height			%i 130
			posx			%i 111
			posy			%i 234
			%) /*CREATE_SEQUENCE*/

		COPY_SELECTED_SEQUENCE		%% (%
			width			%i 280
			height			%i 130
			posx			%i 121
			posy			%i 232
			%) /*COPY_SELECTED_SEQUENCE*/

		HELIX_PROPERTIES		%% (%
			width			%i 454
			height			%i 718
			posx			%i 472
			posy			%i 38
			%) /*HELIX_PROPERTIES*/

		KEY_MAPPINGS		%% (%
			width			%i 185
			height			%i 706
			posx			%i 493
			posy			%i 54
			%) /*KEY_MAPPINGS*/

		EDIT_PROPERTIES		%% (%
			width			%i 298
			height			%i 165
			posx			%i 203
			posy			%i 193
			%) /*EDIT_PROPERTIES*/

		GDE			%% (%
			width			%i 700
			height			%i 30
			posx			%i 442
			posy			%i 1114
			%) /*GDE*/

		COLORS_AND_FONTS		%% (%
			width			%i 794
			height			%i 636
			posx			%i 397
			posy			%i 279
			%) /*COLORS_AND_FONTS*/

		%) /*windows*/

	GDE			%% (%
		horizontal_page_increment		%i 50
		vertical_page_increment		%i 50
		scroll_delay_vertical		%i 20
		scroll_delay_horizontal		%i 20
		scroll_width_horizontal		%i 9
		scroll_width_vertical		%i 20
		%) /*GDE*/

	%) /*window*/

species_name		"3esccoli"
aligner			%% (%
	pt_server		%i 5
	use_self		%i 0
	mark_profile		%i 1
	clip_profile		%f 0.7
	aa			%f 0
	ac			%f 3
	ag			%f 1
	at			%f 3
	cc			%f 0
	cg			%f 3
	ct			%f 1
	gg			%f 0
	gt			%f 3
	tt			%f 0
	gap_panelty		%f 5
	igap_panelty		%f 0.2
	minf			%i 3
	maxf			%i 30
	minw			%f 0.7
	maxew			%f 0.2
	det			%% (%
		cl			%f 0.25
		cm			%f 0.5
		ch			%f 0.8
		ib			%i 5
		ic			%i 5
		%) /*det*/

	what			%i 0
	against			%i 0
	sagainst		""
	version			%i 1
	%) /*aligner*/

tools			%% (%
	search			%% (%
		string			""
		mismatches		%i 0
		gaps			%i 0
		u_t			%i 0
		upper			%i 0
		what			%i 0
		%) /*search*/

	%) /*tools*/

textedit		%% (%
	command			"textedit * &"
	%) /*textedit*/

submission		%% (%
	source			"/usr2/arb/lib/submit/submiss.embl"
	file			"NisSpeci.submit"
	privat			"$(ADDRESS)=Technische Universitaet Muenchen:\J$(YOUR NAME)=Wolfgang LUDWIG, Dr.:\J$(INSTITUTION)=Lehrstuhl fuer Mikrobiologie:\J$(MAIL)=ludwig@mbitum2.biol.chemie.tu-muenchen.de:\J$(PHONE)=+89 2105 2370:\J$(TELEFAX)=+89 2105 2360:\J"
	%) /*submission*/

key_mapping		%% (%
	key_0			%% (%
		source			"b"
		dest			"A"
		%) /*key_0*/

	key_1			%% (%
		source			"h"
		dest			"C"
		%) /*key_1*/

	key_2			%% (%
		source			"j"
		dest			"G"
		%) /*key_2*/

	key_3			%% (%
		source			"l"
		dest			"U"
		%) /*key_3*/

	key_4			%% (%
		source			" "
		dest			"-"
		%) /*key_4*/

	key_5			%% (%
		source			"z"
		dest			"."
		%) /*key_5*/

	key_6			%% (%
		source			"s"
		dest			"A"
		%) /*key_6*/

	key_7			%% (%
		source			"r"
		dest			"C"
		%) /*key_7*/

	key_8			%% (%
		source			"t"
		dest			"G"
		%) /*key_8*/

	key_9			%% (%
		source			"y"
		dest			"U"
		%) /*key_9*/

	key_10			%% (%
		source			"B"
		dest			"a"
		%) /*key_10*/

	key_11			%% (%
		source			"H"
		dest			"c"
		%) /*key_11*/

	key_12			%% (%
		source			"J"
		dest			"g"
		%) /*key_12*/

	key_13			%% (%
		source			"L"
		dest			"u"
		%) /*key_13*/

	key_14			%% (%
		source			""
		dest			""
		%) /*key_14*/

	key_15			%% (%
		source			""
		dest			""
		%) /*key_15*/

	key_16			%% (%
		source			""
		dest			""
		%) /*key_16*/

	key_17			%% (%
		source			""
		dest			""
		%) /*key_17*/

	key_18			%% (%
		source			""
		dest			""
		%) /*key_18*/

	key_19			%% (%
		source			""
		dest			""
		%) /*key_19*/

	enable			%i 1
	%) /*key_mapping*/


edit			%% (%
	line_spacing		%i 3
	helix_at_extendeds		%i 0
	center_spacing		%i -5
	%) /*edit*/

Helix			%% (%
	pairs			%% (%
		Strong_Pair		"GC AU AT"
		Normal_Pair		"GU GT"
		Weak_Pair		"GA"
		No_Pair			"AA AC CC CT CU GG"
		User_Pair		".A .C .G .T .U .N"
		User_Pair2		"-A -C -G -T -U "
		User_Pair3		"NA NC NG NT NU -N NN"
		User_Pair4		"UU TT uu tt"
		Non_Standart0		""
		Non_Standart1		""
		Non_Standart2		""
		Non_Standart3		""
		Non_Standart4		""
		Non_Standart5		""
		Non_Standart6		""
		Non_Standart7		""
		Non_Standart8		""
		Non_Standart9		""
		Not_Non_Standart		""
		Default			""
		Non_Standart_aA		""
		%) /*pairs*/

	symbols			%% (%
		Strong_Pair		"~"
		Normal_Pair		"-"
		Weak_Pair		"="
		No_Pair			"#"
		User_Pair		"*"
		User_Pair2		"#"
		User_Pair3		"* "
		User_Pair4		"+ "
		Non_Standart0		""
		Non_Standart1		""
		Non_Standart2		""
		Non_Standart3		""
		Non_Standart4		""
		Non_Standart5		""
		Non_Standart6		""
		Non_Standart7		""
		Non_Standart8		""
		Non_Standart9		""
		Not_Non_Standart		""
		Default			" "
		Non_Standart_aA		""
		%) /*symbols*/

	%) /*Helix*/

vectorfont		%% (%
	userscale		%f 1
	name			"lib/pictures/fontgfx.vfont"
	active			%i 1
	directory		"lib/pictures"
	filter			".vfont"
	file_name		"lib/pictures/fontgfx.vfont"
	%) /*vectorfont*/

gde			%% (%
	use_ex			%i 0
	top_area		%i 1
	middle_area		%i 1
	bottom_area		%i 1
	showhelix		%i 1
	filter			%% (%
		name			""
		filter			""
		alignment		""
		%) /*filter*/

	species			%i 1
	compression		%i 1
	top_area_sai		%i 1
	top_area_helix		%i 1
	middle_area_sai		%i 1
	middle_area_helix		%i 1
	bottom_area_sai		%i 1
	bottom_area_helix		%i 1
	%) /*gde*/

naligner		%% (%
	what			%i 0
	against			%i 0
	sagainst		""
	pt_server		%i -1
	mark_profile		%i 1
	version			%i 1
	aa			%f 0
	ac			%f 3
	ag			%f 1
	at			%f 3
	cc			%f 0
	cg			%f 3
	ct			%f 1
	gg			%f 0
	gt			%f 3
	tt			%f 0
	gap_panelty		%f 5
	igap_panelty		%f 0.2
	minf			%i 3
	maxf			%i 30
	minw			%f 0.7
	maxew			%f 0.2
	det			%% (%
		cl			%f 0.25
		cm			%f 0.5
		ch			%f 0.8
		ib			%i 5
		ic			%i 5
		%) /*det*/

	%) /*naligner*/