/*ARBDB ASCII*/
window	%% (%
	font		"8x13bold"
	foreground		"black"
	background		"grey"
	color_1		"red"
	color_2		"green"
	color_3		"blue"
	ARB_NT	%% (%
		horizontal_page_increment	%i 50
		vertical_page_increment	%i 50
		scroll_delay_vertical	%i 20
		scroll_delay_horizontal	%i 20
		scroll_width_horizontal	%i 9
		scroll_width_vertical	%i 20
		%) /*ARB_NT*/

	GDE	%% (%
		horizontal_page_increment	%i 50
		vertical_page_increment	%i 50
		scroll_delay_vertical	%i 20
		scroll_delay_horizontal	%i 20
		scroll_width_horizontal	%i 9
		scroll_width_vertical	%i 20
		%) /*GDE*/

	windows	%% (%
		ARB_INTRO	%% (%
			width	%i 560
			height	%i 440
			posx	%i 261
			posy	%i 195
			%) /*ARB_INTRO*/

		ARB_NT	%% (%
			width	%i 954
			height	%i 801
			posx	%i 0
			posy	%i 3
			%) /*ARB_NT*/

		SELECT_AN_ALIGNMENT	%% (%
			width	%i 207
			height	%i 118
			posx	%i 395
			posy	%i 174
			%) /*SELECT_AN_ALIGNMENT*/

		SELECT_A_TREE	%% (%
			width	%i 207
			height	%i 237
			posx	%i 385
			posy	%i 122
			%) /*SELECT_A_TREE*/

		SAVE_ARB_DB	%% (%
			width	%i 360
			height	%i 384
			posx	%i 68
			posy	%i 124
			%) /*SAVE_ARB_DB*/

		SEARCH_and_QUERY	%% (%
			width	%i 460
			height	%i 550
			posx	%i 37
			posy	%i 285
			%) /*SEARCH_and_QUERY*/

		TREE_ADMIN	%% (%
			width	%i 405
			height	%i 265
			posx	%i 76
			posy	%i 112
			%) /*TREE_ADMIN*/

		HELP_WINDOW	%% (%
			width	%i 720
			height	%i 680
			posx	%i 417
			posy	%i 97
			%) /*HELP_WINDOW*/

		ARB_EXPORT	%% (%
			width	%i 520
			height	%i 560
			posx	%i 68
			posy	%i 112
			%) /*ARB_EXPORT*/

		NDS	%% (%
			width	%i 710
			height	%i 373
			posx	%i 64
			posy	%i 464
			%) /*NDS*/

		NDS_SELECT	%% (%
			width	%i 240
			height	%i 320
			posx	%i 195
			posy	%i 0
			%) /*NDS_SELECT*/

		SPECIES_INFORMATION	%% (%
			width	%i 320
			height	%i 715
			posx	%i 817
			posy	%i 42
			%) /*SPECIES_INFORMATION*/

		Consensus	%% (%
			width	%i 170
			height	%i 620
			posx	%i 5
			posy	%i 0
			%) /*Consensus*/

		Expert_Window	%% (%
			width	%i 505
			height	%i 625
			posx	%i 79
			posy	%i 123
			%) /*Expert_Window*/

		COLORS_AND_FONTS	%% (%
			width	%i 794
			height	%i 256
			posx	%i 50
			posy	%i 491
			%) /*COLORS_AND_FONTS*/

		WINDOW_PROPERTIES	%% (%
			width	%i 596
			height	%i 332
			posx	%i 192
			posy	%i 110
			%) /*WINDOW_PROPERTIES*/

		GDE__File__Import_Foreign_Format_using_GDEreadseq_dangerous__	%% (%
			width	%i 520
			height	%i 324
			posx	%i 67
			posy	%i 120
			%) /*GDE__File__Import_Foreign_Format_using_GDEreadseq_dangerous__*/

		GDE__File__Export_Foreign_Format_using_GDEreadseq_slow_	%% (%
			width	%i 520
			height	%i 362
			posx	%i 71
			posy	%i 126
			%) /*GDE__File__Export_Foreign_Format_using_GDEreadseq_slow_*/

		GDE__File__Pretty_Print_using_GDEreadseq_	%% (%
			width	%i 774
			height	%i 679
			posx	%i 62
			posy	%i 115
			%) /*GDE__File__Pretty_Print_using_GDEreadseq_*/

		EXPORT_TREE_TO_FILE	%% (%
			width	%i 400
			height	%i 470
			posx	%i 52
			posy	%i 110
			%) /*EXPORT_TREE_TO_FILE*/

		GDE__Phylogeny__FastDnaMl_max_50_Species	%% (%
			width	%i 520
			height	%i 356
			posx	%i 72
			posy	%i 119
			%) /*GDE__Phylogeny__FastDnaMl_max_50_Species*/

		GDE__Phylogeny__Phylip_help	%% (%
			width	%i 520
			height	%i 321
			posx	%i 59
			posy	%i 124
			%) /*GDE__Phylogeny__Phylip_help*/

		GDE__Phylogeny__DeSoete_Tree_fit	%% (%
			width	%i 536
			height	%i 568
			posx	%i 87
			posy	%i 122
			%) /*GDE__Phylogeny__DeSoete_Tree_fit*/

		GDE__Phylogeny__Phylip_ParsimonyML	%% (%
			width	%i 520
			height	%i 643
			posx	%i 67
			posy	%i 119
			%) /*GDE__Phylogeny__Phylip_ParsimonyML*/

		GDE__Phylogeny__Phylip_Distance_methods	%% (%
			width	%i 520
			height	%i 635
			posx	%i 76
			posy	%i 151
			%) /*GDE__Phylogeny__Phylip_Distance_methods*/

		GDE__Phylogeny__Phylip_Distance_Matrix	%% (%
			width	%i 520
			height	%i 429
			posx	%i 75
			posy	%i 126
			%) /*GDE__Phylogeny__Phylip_Distance_Matrix*/

		ALIGNMENT_INFORMATION	%% (%
			width	%i 525
			height	%i 345
			posx	%i 611
			posy	%i 0
			%) /*ALIGNMENT_INFORMATION*/

		INSERT_CHAR	%% (%
			width	%i 360
			height	%i 170
			posx	%i 233
			posy	%i 0
			%) /*INSERT_CHAR*/

		ALIGNMENT_RENAME	%% (%
			width	%i 280
			height	%i 130
			posx	%i 331
			posy	%i 40
			%) /*ALIGNMENT_RENAME*/

		ALIGNMENT_CREATE	%% (%
			width	%i 280
			height	%i 130
			posx	%i 343
			posy	%i 40
			%) /*ALIGNMENT_CREATE*/

		ALIGNMENT_COPY	%% (%
			width	%i 280
			height	%i 130
			posx	%i 340
			posy	%i 33
			%) /*ALIGNMENT_COPY*/

		COPY_DNA_to_PRO	%% (%
			width	%i 400
			height	%i 340
			posx	%i 173
			posy	%i 157
			%) /*COPY_DNA_to_PRO*/

		SAI_INFORMATION	%% (%
			width	%i 405
			height	%i 425
			posx	%i 231
			posy	%i 129
			%) /*SAI_INFORMATION*/

		SAI_RENAME	%% (%
			width	%i 280
			height	%i 130
			posx	%i 0
			posy	%i 126
			%) /*SAI_RENAME*/

		SAI_COPY	%% (%
			width	%i 280
			height	%i 130
			posx	%i 0
			posy	%i 162
			%) /*SAI_COPY*/

		Conservation_Profile_Distance_Matrix	%% (%
			width	%i 410
			height	%i 320
			posx	%i 99
			posy	%i 144
			%) /*Conservation_Profile_Distance_Matrix*/

		AUTORENAME_SPECIES	%% (%
			width	%i 320
			height	%i 240
			posx	%i 95
			posy	%i 103
			%) /*AUTORENAME_SPECIES*/

		SORT_DATABASE	%% (%
			width	%i 300
			height	%i 400
			posx	%i 241
			posy	%i 120
			%) /*SORT_DATABASE*/

		PROBE_DESIGN	%% (%
			width	%i 600
			height	%i 380
			posx	%i 49
			posy	%i 83
			%) /*PROBE_DESIGN*/

		PROBE_MATCH	%% (%
			width	%i 880
			height	%i 455
			posx	%i 32
			posy	%i 0
			%) /*PROBE_MATCH*/

		PD_RESULT	%% (%
			width	%i 940
			height	%i 360
			posx	%i 15
			posy	%i 483
			%) /*PD_RESULT*/

		GDE	%% (%
			width	%i 700
			height	%i 30
			posx	%i 410
			posy	%i 1000
			%) /*GDE*/

		CHECK_GCG_LIST	%% (%
			width	%i 360
			height	%i 650
			posx	%i 162
			posy	%i 106
			%) /*CHECK_GCG_LIST*/

		%) /*windows*/

	%) /*window*/

presets	%% (%
	tree_name		""
	tree_dest		""
	tree_security	%i 0
	use		""
	alignment_name		""
	alignment_dest		""
	alignment_type		""
	alignment_len	%i 0
	aligned	%i 0
	security	%i 0
	extended_name		""
	extended_dest		""
	extended_security	%i 0
	%) /*presets*/

focus	%% (%
	tree_name		"tree_main"
	%) /*focus*/

con	%% (%
	alignment		"ali_16s"
	which_species		"marked"
	group		"off"
	countgaps		"on"
	upper	%i 95
	lower	%i 70
	gapbound	%i 60
	considbound	%i 30
	name		"refcon"
	result		"complex"
	%) /*con*/

probe_design	%% (%
	DTEDGE	%f 0.500000
	DT	%f 0.500000
	bonds	%% (%
		pos0	%f 0.000000
		pos1	%f 0.000000
		pos2	%f 0.500000
		pos3	%f 1.100000
		pos4	%f 0.000000
		pos5	%f 0.000000
		pos6	%f 1.500000
		pos7	%f 0.000000
		pos8	%f 0.500000
		pos9	%f 1.500000
		pos10	%f 0.400000
		pos11	%f 0.900000
		pos12	%f 1.100000
		pos13	%f 0.000000
		pos14	%f 0.900000
		pos15	%f 0.000000
		%) /*bonds*/

	SPLIT	%f 0.500000
	MINLENGTH	%i 15
	MAXLENGTH	%i 18
	MINTEMP	%f 30.000000
	MAXTEMP	%f 100.000000
	MINGC	%f 50.000000
	MAXGC	%f 100.000000
	MAXBOND	%i 4
	MINPOS	%i 0
	MAXPOS	%i 100000
	MINTARGETS	%f 50.000000
	MISHIT	%i 0
	CLIPRESULT	%i 50
	pt_server	%i 0

	%) /*probe_design*/

probe_match	%% (%
	mark_hits	%i 1
	sort_by	%i 0
	complement	%i 0
	mismatches	%i 0
	clip_hits	%i 1000
	sequence		""
	%) /*probe_match*/

cpro	%% (%
	alignment		""
	which_species		"marked"
	which_result		"transversion"
	countgaps		""
	condensename		""
	transratio	%f 0.500000
	maxdistance	%i 100
	resolution	%i 100
	partition	%i 100
	drawmode0	%i 0
	drawmode1	%i 0
	leastaccu	%i 3
	leastmax	%i 50
	firsttoreach	%i 50
	firstreachedstep	%i 4
	leastcompares	%i 300
	gridhorizontal	%i 20
	gridvertical	%i 20
	save	%% (%
		file_name		""
		directory		"."
		filter		"*.cpr"
		%) /*save*/

	load	%% (%
		file_name		""
		directory		"."
		filter		"*.cpr"
		%) /*load*/

	%) /*cpro*/

gde	%% (%
	alignment		"ali_16s"
	filter	%% (%
		name		"none"
		filter		""
		alignment		""
		cancel		".0-"
		%) /*filter*/

	species	%i 1
	compression	%i 1
	File	%% (%
		Pretty_Print	%% (%
			NAMETOP		""
			NAMELEFT		"-nameleft"
			NAMERIGHT		""
			NUMTOP		"-numtop"
			NUMBOT		""
			NUMLEFT		""
			NUMRIGHT		""
			MATCH		"-match"
			GAPC		""
			WIDTH	%i 100
			COLS	%i 0
			%) /*Pretty_Print*/

		Export_Foreign_Format	%% (%
			FORMAT		"genbank"
			OUTPUTFILE		""
			%) /*Export_Foreign_Format*/

		%) /*File*/

	%) /*gde*/

insertchar	%% (%
	nchar	%i 0
	characters		""
	%) /*insertchar*/

awt_rename	%% (%
	use_advice	%i 1
	save_data	%i 1
	%) /*awt_rename*/

etc_check_gcg	%% (%
	fetch		"fetch"
	textedit		"textedit"
	minlen	%i 400
	exclude_0		""
	exclude_1		""
	exclude_2		""
	exclude_3		""
	exclude_4		""
	exclude_5		""
	exclude_6		""
	exclude_7		""
	include_0		""
	include_1		""
	include_2		""
	include_3		""
	%) /*etc_check_gcg*/

ad_tree	%% (%
	sort_1		"name"
	sort_2		"full_name"
	sort_3		"name"
	%) /*ad_tree*/

awt	%% (%
	dtree	%% (%
		baselinewidth	%i 0
		verticaldist	%f 0.800000
		autojump	%i 1
		%) /*dtree*/

	%) /*awt*/

vectorfont	%% (%
	userscale	%f 1.000000
	name		"lib/pictures/fontgfx.vfont"
	active	%i 1
	directory		"lib/pictures"
	filter		".vfont"
	file_name		"lib/pictures/fontgfx.vfont"
	%) /*vectorfont*/