#******************* Syntax *********************************** # # [USER:]SERVER_ID HOST:IP_NR [programm args] # [USER:]SERVER_ID :SOCKETPATH [programm args] # [xxx] means optional field # all $(enviroment_variable) are replaced by the value of the 'enviroment_variable'. # if host is localhost then it is replaced by the result of `hostname`. # # Specifying an username before the SERVER_ID makes the server user specific. # # This file is searched at several locations: # - in the current directory # - in the $(HOME) (=home directory of the current user) # - in $(ARBHOME)/lib # The first occurrance found is taken. # # Existing SERVER_IDs: # # ARB_DB_SERVER Your private database server. It is automatically started # ARB_PT_SERVER Default PT_SERVER for PB_RETRIEVE (privat TU_Munich server) # ARB_PT_SERVERn Global PT_SERVERs. Needed for fast database search (align seq, probe des.) # n starts from 0 to max, no number can be excluded !!! # ARB_NAME_SERVER Generates short names for species (using 'acc') # ARB_NAME_SERVER_field Generates short names for species (using 'acc' and 'field') # #***************************************************************** # version of arb_tcp.dat ARB_TCP_DAT_VERSION 2 #*********** Private Servers (for each user) ****************** # # This is a local server, running on one machine. Each user has his own socket: # ARB_PID is an Enviroment Variable which is set by the command 'arb' to its own process id # see programm $ARBHOME/SH/arb_clean to remove the sockets ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) # If you want to run programs on a workstation cluster, you have to assign your arbdb server # and one ip-id for each user. To choose an ip_id choose any number between 1000 and 4000 and # examine /etc/services whether this ip-id has not yet been allocated by another programm # smith:ARB_DB_SERVER myhost:4011 // socket for smith ('arb' has to be started on 'myhost') # ludwig:ARB_DB_SERVER myhost:4012 // socket for ludwig # ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) // and sockets for all others #*********** Global Servers (for all users) ****************** # #*********** Nameserver The server should run on the nfs server ****************** # The primary nameserver (ARB_NAME_SERVER) uses the field 'acc' for species identification # # You may define additional nameservers, using one additional field for identification. # The defined nameserver 'ARB_NAME_SERVER_START' uses the fields 'acc' and 'start'. ARB_NAME_SERVER localhost:3020 arb_name_server -d$(ARBHOME)/lib/nas/names.dat ARB_NAME_SERVER_START localhost:3021 arb_name_server -d$(ARBHOME)/lib/nas/names_start.dat -fstart=1 # ARB_NAME_SERVER_STRAIN localhost:3022 arb_name_server -d$(ARBHOME)/lib/nas/names_strain.dat -fstrain= # ARB_NAME_SERVER_POS_START localhost:3023 arb_name_server -d$(ARBHOME)/lib/nas/names_pos_start.dat -fpos_start=1 #*********** PT_SERVERS The server should run on the nfs server ****************** #******* You may add new pt_servers here: (numbers must be continued) ********* # Note: If the database name is '!ASSUME_RUNNING' (i.e. -D!ASSUME_RUNNING), ARB will not # try to start/stop/update/... the server and will not check DB for existance. # To use such a PT-Server you'll have to start it manually on the remote host ARB_PT_SERVER0 localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/probe_server.arb RESERVED ARB_PT_SERVER1 localhost:3031 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_rRNA.arb ARB_PT_SERVER2 localhost:3032 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_rRNA.arb ARB_PT_SERVER3 localhost:3033 arb_pt_server -D$(ARBHOME)/lib/pts/user1.arb ARB_PT_SERVER4 localhost:3034 arb_pt_server -D$(ARBHOME)/lib/pts/user2.arb ARB_PT_SERVER5 localhost:3035 arb_pt_server -D$(ARBHOME)/lib/pts/user3.arb ARB_PT_SERVER6 localhost:3036 arb_pt_server -D$(ARBHOME)/lib/pts/user4.arb ARB_PT_SERVER7 localhost:3037 arb_pt_server -D$(ARBHOME)/lib/pts/user5.arb ARB_PT_SERVER8 localhost:3038 arb_pt_server -D$(ARBHOME)/lib/pts/user6.arb ARB_PT_SERVER9 localhost:3039 arb_pt_server -D$(ARBHOME)/lib/pts/user7.arb ARB_PT_SERVER10 localhost:3040 arb_pt_server -D$(ARBHOME)/lib/pts/user8.arb