#define STD_REMOVE(in1)         /bin/rm -f in1 infile intree outfile outtree treefile arb_read_tree_args

#define GOTO_LOCAL_DIR          mkdir -p ~/.arb_tmp/$$; cd ~/.arb_tmp/$$; STD_REMOVE(nofile)
#define RM_LOCAL_DIR(in1)       cd ~/.arb_tmp/$$ ; STD_REMOVE(in1); cd .. ; rmdir $$

#define GEN_INFILE(in1)         GOTO_LOCAL_DIR ; arb_convert_aln -GenBank in1 -phylip infile
#define RM_LOCAL_FILES(in1)     RM_LOCAL_DIR(in1)

#define RUN_IN_WINDOW(cmd)      ${ARB_XCMD:-cmdtool} bash -x -c ''LD_LIBRARY_PATH="${ARB_LIBRARY_PATH:-/usr/arb/lib}";export LD_LIBRARY_PATH; cmd ;arb_wait''

#include <warning.genmenu>

lmenu:export
#include <export.genmenu>

lmenu:pretty_print
#include <pretty_print.genmenu>

lmenu:import
#include <import.genmenu>

menu:align
#include <align.genmenu>

menu:user
#include <start_arb.genmenu>

menu:SAI
#include <dnamlrates.genmenu>

menu:Incremental phylogeny
#include <inc_fastdnaml.genmenu>

menu:Phylogeny_DistMatrix
#include <phylip_dist_org.genmenu>
#include <phylip_dist.genmenu>

menu:Phylogeny_MaxParsimony
#include <phylip_pars.genmenu>

menu:Phylogeny_MaxLikelyhood
#include <fastdnaml.genmenu>

#define RAXML_DNA
#include <raxml.genmenu>
#undef RAXML_DNA
#include <raxml.genmenu>

#include <phylip_ml.genmenu>
#include <molphy.genmenu>

menu:Phylogeny_Other
#include <puzzle.genmenu>
#include <desoete.genmenu>