.SUFFIXES: .c .cxx .depend .o

TOOLS := \
	arb_2_ascii \
	arb_2_bin \
	arb_a2ps \
	arb_count_chars \
	arb_dnarates \
	arb_export_rates \
	arb_export_tree \
	arb_gene_probe \
	arb_message \
	arb_newick_2_otb \
	arb_notify \
	arb_primer \
	arb_probe \
	arb_proto_2_xsub \
	arb_read_tree \
	arb_replace \
	arb_swap_rnastr \

ifeq ($(DEBUG),1)
TOOLS += \
	arb_perf_test \
	arb_test \

endif

LIB_ARBDB = $(LIBPATH) -lARBDB

OBJECTS:=$(addsuffix .o,$(TOOLS))
BINARIES:=$(addprefix $(ARBHOME)/bin/,$(TOOLS))

all: $(BINARIES)

%.o: %.cxx 
	$(CPP) $(cflags) -c $< $(CPPINCLUDES) $(POST_COMPILE)

%.o: %.c
	$(ACC) $(cflags) -c $< $(CPPINCLUDES) $(POST_COMPILE)

$(ARBHOME)/bin/arb_probe: arb_probe.o
	$(LINK_EXECUTABLE) $@ $< ../SERVERCNTRL/SERVERCNTRL.a ../PROBE_COM/client.a $(LIB_ARBDB)

$(ARBHOME)/bin/arb_newick_2_otb: arb_newick_2_otb.o
	$(LINK_EXECUTABLE) $@ $< ../CAT/CAT.a $(LIB_ARBDB)

$(ARBHOME)/bin/%: %.o
	$(LINK_EXECUTABLE) $@ $< $(LIB_ARBDB)

clean:
	rm -f $(BINARIES)
	rm -f $(OBJECTS)

DEPENDS = $(OBJECTS:.o=.depend)
depends: $(DEPENDS) 
	@cat $(DEPENDS) | grep -v '^#' >>Makefile
	@rm $(DEPENDS)
$(DEPENDS): depend.init
depend.init:
	$(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies
.cxx.depend:
	$(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
.c.depend:
	$(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@

# DO NOT DELETE

# Do not add dependencies manually - use 'make depend' in $ARBHOME
# For formatting issues see SOURCE_TOOLS/fix_depends.pl

arb_2_ascii.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_2_ascii.o: $(ARBHOME)/INCLUDE/attributes.h

arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_2_bin.o: $(ARBHOME)/INCLUDE/attributes.h

arb_count_chars.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_count_chars.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_count_chars.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_count_chars.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_count_chars.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_count_chars.o: $(ARBHOME)/INCLUDE/attributes.h

arb_dnarates.o: DNAml_rates_1_0.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/attributes.h
arb_dnarates.o: $(ARBHOME)/INCLUDE/aw_awars.hxx

arb_export_rates.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/attributes.h
arb_export_rates.o: $(ARBHOME)/INCLUDE/aw_awars.hxx

arb_export_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_export_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_export_tree.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_export_tree.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_export_tree.o: $(ARBHOME)/INCLUDE/attributes.h

arb_gene_probe.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/adGene.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_gene_probe.o: $(ARBHOME)/INCLUDE/attributes.h

arb_message.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_message.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_message.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_message.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_message.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_message.o: $(ARBHOME)/INCLUDE/attributes.h

arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/attributes.h
arb_newick_2_otb.o: $(ARBHOME)/INCLUDE/cat_tree.hxx

arb_notify.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_notify.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_notify.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_notify.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_notify.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_notify.o: $(ARBHOME)/INCLUDE/attributes.h

arb_primer.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_primer.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_primer.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_primer.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_primer.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_primer.o: $(ARBHOME)/INCLUDE/attributes.h

arb_probe.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_probe.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_probe.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_probe.o: $(ARBHOME)/INCLUDE/attributes.h
arb_probe.o: $(ARBHOME)/INCLUDE/client.h
arb_probe.o: $(ARBHOME)/INCLUDE/PT_com.h
arb_probe.o: $(ARBHOME)/INCLUDE/servercntrl.h

arb_proto_2_xsub.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_proto_2_xsub.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_proto_2_xsub.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_proto_2_xsub.o: $(ARBHOME)/INCLUDE/attributes.h

arb_read_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_read_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_read_tree.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_read_tree.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_read_tree.o: $(ARBHOME)/INCLUDE/attributes.h

arb_replace.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_replace.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_replace.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_replace.o: $(ARBHOME)/INCLUDE/attributes.h

arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/ad_prot.h
arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/arb_assert.h
arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/arbdb.h
arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/arbdbt.h
arb_swap_rnastr.o: $(ARBHOME)/INCLUDE/attributes.h