#******************* Syntax *********************************** # # [USER:]SERVER_ID HOST:IP_NR [programm args] # [USER:]SERVER_ID :SOCKETPATH [programm args] # [xxx] means optional field # all $(enviroment_variable) are replaced by the value of the 'enviroment_variable' # if host is localhost than it replaces by `hostname` # # Existing SERVER_IDs: # # ARB_DB_SERVER Your private database server. It is automatically started # ARB_PT_SERVER Default PT_SERVER for PB_RETRIEVE (privat TU_Munich server) # ARB_PT_SERVERn Global PT_SERVERs. Needed for fast database search (align seq, probe des.) # n starts from 0 to max, no number can be excluded !!! # ARB_NAME_SERVER Generates short names for species # #***************************************************************** #*********** Private Servers (for each user) ****************** # # This is a local server, running on one machine. Each user has his own socket: # ARB_PID is an Enviroment Variable which is set by the command 'arb' to its own process id # see programm $ARBHOME/SH/arb_clean to remove the sockets ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) # If you want to run programms on a workstation cluster, you have to assign your arbdb server # and one ip-id for each user. To choose an ip_id choose any number between 1000 and 4000 and # examine /etc/services whether this ip-id has not yet been allocated by another programm # smith:ARB_DB_SERVER myhost:4011 // socket for smith ('arb' have to be started on 'myhost') # ludwig:ARB_DB_SERVER myhost:4012 // socket for ludwig # ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) // and sockets for all others #*********** Global Servers (for all users) ****************** # #*********** Nameserver The server should run on the nfs server ****************** ARB_NAME_SERVER localhost:3029 arb_name_server -d$(ARBHOME)/lib/nas/names.dat #*********** PT_SERVERS The server should run on the nfs server ****************** #******* You may add new pt_servers here: (numbers must be continues) ********* ARB_PT_SERVER localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/16s_rrna_aligned.arb ARB_PT_SERVER0 localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/23s_rrna_aligned.arb ARB_PT_SERVER1 localhost:3031 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_rRNA.arb ARB_PT_SERVER2 localhost:3032 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_rRNA.arb ARB_PT_SERVER3 localhost:3033 arb_pt_server -D$(ARBHOME)/lib/pts/5S_rRNA.arb ARB_PT_SERVER4 localhost:3035 arb_pt_server -D$(ARBHOME)/lib/pts/atp.arb ARB_PT_SERVER5 localhost:3036 arb_pt_server -D$(ARBHOME)/lib/pts/rrna.arb ARB_PT_SERVER6 localhost:3038 arb_pt_server -D$(ARBHOME)/lib/pts/user.arb ARB_PT_SERVER7 localhost:3043 arb_pt_server -D$(ARBHOME)/lib/pts/ITS.arb ARB_PT_SERVER8 localhost:3037 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_WL.arb ARB_PT_SERVER9 localhost:3040 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_WL.arb ARB_PT_SERVER10 localhost:3044 arb_pt_server -D$(ARBHOME)/lib/pts/PRB_WL.arb ARB_PT_SERVER11 localhost:3039 arb_pt_server -D$(ARBHOME)/lib/pts/develop.arb