User scripts ------------ Scripts stored SH are delivered to users with ARB releases. User scripts: arb Used to start arb arb_clean Kill running arb processes (does not kill pt servers) arb_installubuntu4arb.sh Install Ubuntu environment for ARB arb_remote Run ARB on a remote machine using ssh arb_panic Try to save database of running ARB (e.g. if ARB does not react) arb_repair Try to repair a broken database arb_who Show arb processes dszmconnect.pl adapter between the ARB program package and the DSZM website example_batch_probe_match.sh probe match from command line Scripts used by ARB or from other scripts: arb_dnapars wrapper for dnapars arb_echo spread parameters to multiple lines arb_fastdnaml wrapper for fastdnaml arb_ign used to ignore some arguments from command line arb_ludwig (alias for arb_remote) arb_phyml wrapper for phyml arb_proml wrapper for proml arb_protpars wrapper for protpars arb_raxml wrapper for raxml arb_sleep Keeps terminal windows open for 60 seconds (unused) arb_textedit Used to edit textfiles arb_textprint Used to print textfiles arb_wait Keep terminal windows open until user presses ENTER Undocumented / maybe obsolete: @@@ FIXME: examine and remove or document these scripts arb_ale arb_bootstrap