#Please insert up references in the next lines (line starts with keyword UP)
UP	arb.hlp
UP	glossary.hlp
UP	pa_quick.hlp
UP	pa_add.hlp

#Please insert subtopic references  (line starts with keyword SUB)
SUB	partial_sequences.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE		Add marked partial species

OCCURRENCE	ARB_PARRSIMONY/Tree/Add species to tree

DESCRIPTION     Use this to add partial sequences into an existing tree.

NOTES		The branchlengths of the added partial sequences represent the
                number of mutations against the full sequence.

                Adding species using this function marks them as "partial sequence" if
                they have no 'ARB_partial' entry yet. Otherwise insertion is aborted.

                All species already in tree are marked as "full sequence" if
                they have no 'ARB_partial' entry yet.

EXAMPLES	None

WARNINGS	Calculating branch length after adding partial sequences
                will lead to wrong lengths.

BUGS		No bugs known