# for variables passed from parent makefile see ../SOURCE_TOOLS/parent_make.txt .SUFFIXES: .o .cxx .depend # objects with autogenerated prototypes (gb_prot.h + ad_prot.h + ad_k_prot.h) GB_O = \ ad_cb.o \ ad_core.o \ ad_load.o \ ad_save_load.o \ adcache.o \ adcomm.o \ adcompr.o \ adExperiment.o \ adfile.o \ adGene.o \ adhash.o \ adhashtools.o \ adindex.o \ adlang1.o \ admalloc.o \ admap.o \ admatch.o \ admath.o \ adoptimize.o \ adperl.o \ adquery.o \ adsocket.o \ adstring.o \ adsystem.o \ adtcp.o \ adTest.o \ adtune.o \ arbdb.o \ gb_aci.o \ # objects with autogenerated prototypes (gb_t_prot.h + ad_t_prot.h) GB_T = \ adali.o \ adChangeKey.o \ aditem.o \ adname.o \ adRevCompl.o \ adseqcompr.o \ adtools.o \ adtree.o \ # objects w/o autogenerated prototypes GB_X = \ ad_colorset.o \ ad_config.o \ arbdbpp.o \ TreeNode.o \ OBJECTS = $(GB_O) $(GB_T) $(GB_X) # ---------------------------------------- check all possible objects are listed above LISTED_OBJECTS = $(sort $(OBJECTS)) POSSIBLE_OBJECTS = $(sort $(subst .cxx,.o,$(wildcard *.cxx))) UNLISTED_OBJECTS = $(filter-out $(LISTED_OBJECTS), $(POSSIBLE_OBJECTS)) # ---------------------------------------- allow misaligned data access in ARBDB ARBDB_CFLAGS := $(cflags) ifeq ('$(USE_GCC_50_OR_HIGHER)', 'yes') ifneq ('$(SANITIZE)', '0') ARBDB_CFLAGS := $(cflags) -fno-sanitize=alignment endif endif # ---------------------------------------- LIB_SHARED=../lib/$(MAIN:.a=).$(SHARED_LIB_SUFFIX) # MAIN contains .a (instead of wanted .so). Translate via do_...-target it: do_$(MAIN) warn_unlisted: Makefile ifneq ('$(UNLISTED_OBJECTS)','') $(error There are objects which should be listed in Makefile: $(UNLISTED_OBJECTS)) else true endif do_ARBDB.a: $(error MAIN='$(MAIN)' is set wrong) do_libARBDB.a: $(LIB_SHARED) warn_unlisted $(LIB_SHARED): $(OBJECTS) $(LINK_SHARED_LIB) $(LIB_SHARED) $(OBJECTS) .cxx.o: $(A_CXX) $(shared_cflags) $(ARBDB_CFLAGS) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) $< proto: global_proto local_proto local_proto: lpro tlpro lpro: $(GB_O:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "Internal database interface" -G -w gb_prot.h -F ^gb_,^gbs_,^gbcm,^gbm_ $^ >gb_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff gb_prot.h.tmp gb_prot.h tlpro: $(GB_T:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "Internal toolkit" -G -w gb_t_prot.h -F ^gb_,^gbt_,^gbs_ $^ >gb_t_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff gb_t_prot.h.tmp gb_t_prot.h global_proto: pro ppro tpro cbpro pro: $(GB_O:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "ARB database interface" -G -P -w ad_prot.h -F ^GB_,^GEN_,^EXP_,^GBS_,^GBT_,^GBCM,^GBC_ -S callback $^ >ad_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff ad_prot.h.tmp ad_prot.h cbpro: $(GB_O:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "ARB database callback interface" -G -w ad_cb_prot.h -F '^GB_+callback' $^ >ad_cb_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff ad_cb_prot.h.tmp ad_cb_prot.h ppro: $(GB_O:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "ARB perl interface" -G -w ad_p_prot.h -F ^GBP_ $^ >ad_p_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff ad_p_prot.h.tmp ad_p_prot.h tpro: $(GB_T:.o=.cxx) ../AISC_MKPTPS/aisc_mkpt -c "ARB toolkit" -G -w ad_t_prot.h -F ^GB_,^GEN_,^EXP_,^GBT_ $^ >ad_t_prot.h.tmp ../SOURCE_TOOLS/mv_if_diff ad_t_prot.h.tmp ad_t_prot.h wc: wc *.[ch] clean: rm -f $(OBJECTS) *.a *.so DEPENDS = $(OBJECTS:.o=.depend) depends: $(DEPENDS) @cat $(DEPENDS) | grep -v '^#' >>Makefile @rm $(DEPENDS) $(DEPENDS): depend.init depend.init: $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies .c.depend: $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ .cxx.depend: $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ # DO NOT DELETE THIS LINE -- make depend depends on it. # Do not add dependencies manually - use 'make depend' in $ARBHOME # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from main) ad_cb.o: ad_cb.h ad_cb.o: ad_cb_prot.h ad_cb.o: ad_hcb.h ad_cb.o: ad_prot.h ad_cb.o: arbdb.h ad_cb.o: arbdb_base.h ad_cb.o: gb_cb.h ad_cb.o: gb_compress.h ad_cb.o: gb_data.h ad_cb.o: gb_header.h ad_cb.o: gb_key.h ad_cb.o: gb_local.h ad_cb.o: gb_main.h ad_cb.o: gb_memory.h ad_cb.o: gb_prot.h ad_cb.o: gb_storage.h ad_cb.o: gb_ta.h ad_cb.o: gb_ts.h ad_cb.o: gb_tune.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_core.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_error.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_file.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_strarray.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_strbuf.h ad_cb.o: $(ARBHOME)/INCLUDE/arb_string.h ad_cb.o: $(ARBHOME)/INCLUDE/arbtools.h ad_cb.o: $(ARBHOME)/INCLUDE/attributes.h ad_cb.o: $(ARBHOME)/INCLUDE/cb.h ad_cb.o: $(ARBHOME)/INCLUDE/cb_base.h ad_cb.o: $(ARBHOME)/INCLUDE/cbtypes.h ad_cb.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_cb.o: $(ARBHOME)/INCLUDE/dupstr.h ad_cb.o: $(ARBHOME)/INCLUDE/gccver.h ad_cb.o: $(ARBHOME)/INCLUDE/smartptr.h ad_cb.o: $(ARBHOME)/INCLUDE/static_assert.h ad_cb.o: $(ARBHOME)/INCLUDE/stringize.h ad_cb.o: $(ARBHOME)/INCLUDE/test_global.h ad_cb.o: $(ARBHOME)/INCLUDE/test_unit.h ad_cb.o: $(ARBHOME)/INCLUDE/ttypes.h ad_colorset.o: ad_colorset.h ad_colorset.o: ad_prot.h ad_colorset.o: ad_t_prot.h ad_colorset.o: arbdb.h ad_colorset.o: arbdb_base.h ad_colorset.o: arbdbt.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_core.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_error.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_strarray.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_strbuf.h ad_colorset.o: $(ARBHOME)/INCLUDE/arb_string.h ad_colorset.o: $(ARBHOME)/INCLUDE/arbtools.h ad_colorset.o: $(ARBHOME)/INCLUDE/attributes.h ad_colorset.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_colorset.o: $(ARBHOME)/INCLUDE/downcast.h ad_colorset.o: $(ARBHOME)/INCLUDE/dupstr.h ad_colorset.o: $(ARBHOME)/INCLUDE/gccver.h ad_colorset.o: $(ARBHOME)/INCLUDE/smartptr.h ad_colorset.o: $(ARBHOME)/INCLUDE/static_assert.h ad_colorset.o: $(ARBHOME)/INCLUDE/stringize.h ad_colorset.o: $(ARBHOME)/INCLUDE/test_global.h ad_config.o: ad_config.h ad_config.o: ad_prot.h ad_config.o: ad_t_prot.h ad_config.o: arbdb.h ad_config.o: arbdb_base.h ad_config.o: arbdbt.h ad_config.o: gb_local.h ad_config.o: gb_prot.h ad_config.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_config.o: $(ARBHOME)/INCLUDE/arb_core.h ad_config.o: $(ARBHOME)/INCLUDE/arb_defs.h ad_config.o: $(ARBHOME)/INCLUDE/arb_error.h ad_config.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_config.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_config.o: $(ARBHOME)/INCLUDE/arb_strarray.h ad_config.o: $(ARBHOME)/INCLUDE/arb_strbuf.h ad_config.o: $(ARBHOME)/INCLUDE/arb_string.h ad_config.o: $(ARBHOME)/INCLUDE/arbtools.h ad_config.o: $(ARBHOME)/INCLUDE/attributes.h ad_config.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_config.o: $(ARBHOME)/INCLUDE/downcast.h ad_config.o: $(ARBHOME)/INCLUDE/dupstr.h ad_config.o: $(ARBHOME)/INCLUDE/gccver.h ad_config.o: $(ARBHOME)/INCLUDE/smartptr.h ad_config.o: $(ARBHOME)/INCLUDE/static_assert.h ad_config.o: $(ARBHOME)/INCLUDE/stringize.h ad_config.o: $(ARBHOME)/INCLUDE/test_global.h ad_config.o: $(ARBHOME)/INCLUDE/test_unit.h ad_core.o: ad_hcb.h ad_core.o: ad_prot.h ad_core.o: arbdb.h ad_core.o: arbdb_base.h ad_core.o: gb_cb.h ad_core.o: gb_data.h ad_core.o: gb_header.h ad_core.o: gb_index.h ad_core.o: gb_key.h ad_core.o: gb_local.h ad_core.o: gb_localdata.h ad_core.o: gb_main.h ad_core.o: gb_memory.h ad_core.o: gb_prot.h ad_core.o: gb_storage.h ad_core.o: gb_ts.h ad_core.o: gb_tune.h ad_core.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_core.o: $(ARBHOME)/INCLUDE/arb_core.h ad_core.o: $(ARBHOME)/INCLUDE/arb_error.h ad_core.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_core.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_core.o: $(ARBHOME)/INCLUDE/arb_string.h ad_core.o: $(ARBHOME)/INCLUDE/arbtools.h ad_core.o: $(ARBHOME)/INCLUDE/attributes.h ad_core.o: $(ARBHOME)/INCLUDE/cb.h ad_core.o: $(ARBHOME)/INCLUDE/cb_base.h ad_core.o: $(ARBHOME)/INCLUDE/cbtypes.h ad_core.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_core.o: $(ARBHOME)/INCLUDE/dupstr.h ad_core.o: $(ARBHOME)/INCLUDE/gccver.h ad_core.o: $(ARBHOME)/INCLUDE/smartptr.h ad_core.o: $(ARBHOME)/INCLUDE/static_assert.h ad_core.o: $(ARBHOME)/INCLUDE/stringize.h ad_core.o: $(ARBHOME)/INCLUDE/test_global.h ad_core.o: $(ARBHOME)/INCLUDE/ttypes.h ad_load.o: ad_io_inline.h ad_load.o: ad_prot.h ad_load.o: ad_t_prot.h ad_load.o: arbdb.h ad_load.o: arbdb_base.h ad_load.o: arbdbt.h ad_load.o: gb_cb.h ad_load.o: gb_data.h ad_load.o: gb_header.h ad_load.o: gb_key.h ad_load.o: gb_load.h ad_load.o: gb_local.h ad_load.o: gb_localdata.h ad_load.o: gb_main.h ad_load.o: gb_map.h ad_load.o: gb_memory.h ad_load.o: gb_prot.h ad_load.o: gb_storage.h ad_load.o: gb_tune.h ad_load.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_load.o: $(ARBHOME)/INCLUDE/arb_core.h ad_load.o: $(ARBHOME)/INCLUDE/arb_defs.h ad_load.o: $(ARBHOME)/INCLUDE/arb_error.h ad_load.o: $(ARBHOME)/INCLUDE/arb_file.h ad_load.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_load.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_load.o: $(ARBHOME)/INCLUDE/arb_progress.h ad_load.o: $(ARBHOME)/INCLUDE/arb_str.h ad_load.o: $(ARBHOME)/INCLUDE/arb_string.h ad_load.o: $(ARBHOME)/INCLUDE/arb_zfile.h ad_load.o: $(ARBHOME)/INCLUDE/arbtools.h ad_load.o: $(ARBHOME)/INCLUDE/attributes.h ad_load.o: $(ARBHOME)/INCLUDE/BufferedFileReader.h ad_load.o: $(ARBHOME)/INCLUDE/cb.h ad_load.o: $(ARBHOME)/INCLUDE/cb_base.h ad_load.o: $(ARBHOME)/INCLUDE/cbtypes.h ad_load.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_load.o: $(ARBHOME)/INCLUDE/downcast.h ad_load.o: $(ARBHOME)/INCLUDE/dupstr.h ad_load.o: $(ARBHOME)/INCLUDE/gccver.h ad_load.o: $(ARBHOME)/INCLUDE/smartptr.h ad_load.o: $(ARBHOME)/INCLUDE/static_assert.h ad_load.o: $(ARBHOME)/INCLUDE/stringize.h ad_load.o: $(ARBHOME)/INCLUDE/test_global.h ad_load.o: $(ARBHOME)/INCLUDE/test_unit.h ad_load.o: $(ARBHOME)/INCLUDE/ttypes.h ad_save_load.o: ad_io_inline.h ad_save_load.o: ad_prot.h ad_save_load.o: arbdb.h ad_save_load.o: arbdb_base.h ad_save_load.o: gb_cb.h ad_save_load.o: gb_data.h ad_save_load.o: gb_header.h ad_save_load.o: gb_key.h ad_save_load.o: gb_load.h ad_save_load.o: gb_local.h ad_save_load.o: gb_main.h ad_save_load.o: gb_map.h ad_save_load.o: gb_memory.h ad_save_load.o: gb_prot.h ad_save_load.o: gb_storage.h ad_save_load.o: gb_tune.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_assert.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_core.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_defs.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_diff.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_error.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_file.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_mem.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_misc.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_msg.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_strbuf.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_string.h ad_save_load.o: $(ARBHOME)/INCLUDE/arb_zfile.h ad_save_load.o: $(ARBHOME)/INCLUDE/arbtools.h ad_save_load.o: $(ARBHOME)/INCLUDE/attributes.h ad_save_load.o: $(ARBHOME)/INCLUDE/cb.h ad_save_load.o: $(ARBHOME)/INCLUDE/cb_base.h ad_save_load.o: $(ARBHOME)/INCLUDE/cbtypes.h ad_save_load.o: $(ARBHOME)/INCLUDE/cxxforward.h ad_save_load.o: $(ARBHOME)/INCLUDE/dupstr.h ad_save_load.o: $(ARBHOME)/INCLUDE/gccver.h ad_save_load.o: $(ARBHOME)/INCLUDE/SigHandler.h ad_save_load.o: $(ARBHOME)/INCLUDE/smartptr.h ad_save_load.o: $(ARBHOME)/INCLUDE/static_assert.h ad_save_load.o: $(ARBHOME)/INCLUDE/stringize.h ad_save_load.o: $(ARBHOME)/INCLUDE/test_global.h ad_save_load.o: $(ARBHOME)/INCLUDE/test_unit.h ad_save_load.o: $(ARBHOME)/INCLUDE/ttypes.h adali.o: ad_prot.h adali.o: ad_t_prot.h adali.o: adGene.h adali.o: arbdb.h adali.o: arbdb_base.h adali.o: arbdbt.h adali.o: gb_local.h adali.o: gb_prot.h adali.o: $(ARBHOME)/INCLUDE/arb_assert.h adali.o: $(ARBHOME)/INCLUDE/arb_core.h adali.o: $(ARBHOME)/INCLUDE/arb_error.h adali.o: $(ARBHOME)/INCLUDE/arb_global_defs.h adali.o: $(ARBHOME)/INCLUDE/arb_mem.h adali.o: $(ARBHOME)/INCLUDE/arb_msg.h adali.o: $(ARBHOME)/INCLUDE/arb_str.h adali.o: $(ARBHOME)/INCLUDE/arb_strarray.h adali.o: $(ARBHOME)/INCLUDE/arb_string.h adali.o: $(ARBHOME)/INCLUDE/arbtools.h adali.o: $(ARBHOME)/INCLUDE/attributes.h adali.o: $(ARBHOME)/INCLUDE/cxxforward.h adali.o: $(ARBHOME)/INCLUDE/downcast.h adali.o: $(ARBHOME)/INCLUDE/dupstr.h adali.o: $(ARBHOME)/INCLUDE/gccver.h adali.o: $(ARBHOME)/INCLUDE/smartptr.h adali.o: $(ARBHOME)/INCLUDE/static_assert.h adali.o: $(ARBHOME)/INCLUDE/stringize.h adali.o: $(ARBHOME)/INCLUDE/test_global.h adali.o: 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